Protein Info for ABIE53_003515 in Paraburkholderia graminis OAS925

Annotation: GntP family gluconate:H+ symporter

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 464 transmembrane" amino acids 7 to 25 (19 residues), see Phobius details amino acids 30 to 53 (24 residues), see Phobius details amino acids 65 to 79 (15 residues), see Phobius details amino acids 105 to 131 (27 residues), see Phobius details amino acids 143 to 161 (19 residues), see Phobius details amino acids 181 to 203 (23 residues), see Phobius details amino acids 246 to 267 (22 residues), see Phobius details amino acids 286 to 307 (22 residues), see Phobius details amino acids 319 to 337 (19 residues), see Phobius details amino acids 349 to 371 (23 residues), see Phobius details amino acids 378 to 398 (21 residues), see Phobius details amino acids 404 to 427 (24 residues), see Phobius details amino acids 439 to 463 (25 residues), see Phobius details PF02447: GntP_permease" amino acids 8 to 462 (455 residues), 532.2 bits, see alignment E=9.8e-164 TIGR00791: transporter, gluconate:H+ symporter (GntP) family" amino acids 8 to 464 (457 residues), 494.2 bits, see alignment E=2e-152 PF03600: CitMHS" amino acids 21 to 410 (390 residues), 61.4 bits, see alignment E=8.8e-21

Best Hits

KEGG orthology group: K03299, gluconate:H+ symporter, GntP family (inferred from 97% identity to bgf:BC1003_2948)

Predicted SEED Role

"Gluconate transporter family protein" in subsystem D-gluconate and ketogluconates metabolism

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (464 amino acids)

>ABIE53_003515 GntP family gluconate:H+ symporter (Paraburkholderia graminis OAS925)
MEAVHGSMLLVYGVIAIALLILLITRYKVYPFLVLIIVSLLLGLASGMPMATIVKSFETG
NGNTLGHIAVVVGLGTMLGKMMAESGGAERIATTLIDWFGEKNIHWAMMVVAIIVGLPVF
FEVGFVLLIPIAFNVAKRTNKSLLLVGLPMVAGLSVVHGLIPPHPAAMLAVQQYHADIGK
TIAYGLIVGVPTAIVAGPLFALMINRYIKLPQENALAAQFLNRDDVALSGTPGGANAAPK
RELPSFGITLFTVLLPVILMLVGSWADLVFTPKTLPNDLLHFVGNSDVALLIAVLVSFWT
FGASRGFNRDQIQKFCGECLAPIAGITLIVGAGGGFGRVLMDSGISKEIVAAATSAHLSP
LLFGWLVAALIRLATGSATVAMTTACGIVAPIAAASAIQVKPELLVLATGSGSLIFSHVN
DGGFWLIKEYFGMTVGQTFKTWSLLETIISLMGLLLTFALAAVL