Protein Info for ABIE53_003451 in Paraburkholderia graminis OAS925

Annotation: MFS family permease

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 500 552 transmembrane" amino acids 20 to 45 (26 residues), see Phobius details amino acids 57 to 80 (24 residues), see Phobius details amino acids 91 to 112 (22 residues), see Phobius details amino acids 115 to 137 (23 residues), see Phobius details amino acids 158 to 180 (23 residues), see Phobius details amino acids 192 to 213 (22 residues), see Phobius details amino acids 247 to 265 (19 residues), see Phobius details amino acids 285 to 303 (19 residues), see Phobius details amino acids 315 to 334 (20 residues), see Phobius details amino acids 452 to 477 (26 residues), see Phobius details amino acids 497 to 516 (20 residues), see Phobius details amino acids 522 to 540 (19 residues), see Phobius details PF00083: Sugar_tr" amino acids 22 to 233 (212 residues), 101 bits, see alignment E=7.6e-33 amino acids 453 to 547 (95 residues), 25.4 bits, see alignment E=6.6e-10 PF07690: MFS_1" amino acids 26 to 331 (306 residues), 93.5 bits, see alignment E=1.3e-30

Best Hits

KEGG orthology group: None (inferred from 97% identity to bug:BC1001_2946)

Predicted SEED Role

"Permeases of the major facilitator superfamily"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (552 amino acids)

>ABIE53_003451 MFS family permease (Paraburkholderia graminis OAS925)
MATVGGHISPVPMTRDEKRVIFASSLGTVFEWYDFYLAGSLAAFISKSFFSGVNPTAGFI
FTLLSFAAGFAVRPFGAVVFGRLGDMVGRKYTFLVTIVIMGVSTFLVGFLPGYAAIGIAS
PVIFIAMRMLQGLALGGEYGGAATYVAEHAPPGRRGFYTAWIQTTATLGLFLSLLVILGV
RTAMGEDAFGAWGWRIPFIASIVLLAISVWIRLQLHESPVFERIKAEGKTSKAPLTEAFG
QWKNLKIVILALIGLTAGQAVVWYTGQFYSLFFLTQTLKVDGATANIMIAIALLIGTPFF
LFFGSLSDRIGRKPIIMAGLLIAALTYFPLFKALTHYVNPALETATAKAPIVVIANPDEC
SFQFNPVGTSKFTSSCDIAKSALSKAGLNYENVAAPAGTAAQIKVGDTVVNTYDGKAADA
KEQGKTFDKTLATTLKSAGYPPKADSSQINWPMSVVILTILVIYVTMVYGPIAAMLVEMF
PTRIRYTSMSLPYHIGNGWFGGFLPATAFAIVAAKGNIYSGLWYPIVIALITFVIGMLFV
RETKDSDIYAKD