Protein Info for ABIE53_003431 in Paraburkholderia graminis OAS925

Annotation: putative branched-subunit amino acid permease

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 141 transmembrane" amino acids 6 to 25 (20 residues), see Phobius details amino acids 43 to 66 (24 residues), see Phobius details amino acids 72 to 93 (22 residues), see Phobius details amino acids 99 to 120 (22 residues), see Phobius details PF03591: AzlC" amino acids 46 to 123 (78 residues), 69.8 bits, see alignment E=1.7e-23

Best Hits

Predicted SEED Role

"Branched-chain amino acid transport protein AzlC"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (141 amino acids)

>ABIE53_003431 putative branched-subunit amino acid permease (Paraburkholderia graminis OAS925)
MLHDLAPISLHFLIAAFGARAFRLMLARLSDTDRRAFLEGARAYSPTLMAICSWGLVTGI
AMSKSVLTLPQALAMSLLCYAGSSQLAVLPLLAAKLPMWTVLLTAAMVNTRFVIFSASAL
PRIFPICRCGGASRSATSTAM