Protein Info for ABIE53_003040 in Paraburkholderia graminis OAS925

Annotation: serine protease Do

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 508 signal peptide" amino acids 1 to 29 (29 residues), see Phobius details TIGR02037: peptidase Do" amino acids 35 to 499 (465 residues), 507.9 bits, see alignment E=1.3e-156 PF00089: Trypsin" amino acids 129 to 284 (156 residues), 64.2 bits, see alignment E=4.9e-21 PF13365: Trypsin_2" amino acids 130 to 261 (132 residues), 129.8 bits, see alignment E=4.2e-41 PF13180: PDZ_2" amino acids 315 to 390 (76 residues), 57.8 bits, see alignment E=3.3e-19 amino acids 438 to 500 (63 residues), 29.4 bits, see alignment E=2.4e-10 PF00595: PDZ" amino acids 316 to 361 (46 residues), 34.7 bits, see alignment 5.8e-12 PF17820: PDZ_6" amino acids 327 to 380 (54 residues), 52 bits, see alignment 1.5e-17 amino acids 445 to 491 (47 residues), 28.7 bits, see alignment 2.8e-10

Best Hits

KEGG orthology group: None (inferred from 98% identity to bug:BC1001_2540)

Predicted SEED Role

"HtrA protease/chaperone protein"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (508 amino acids)

>ABIE53_003040 serine protease Do (Paraburkholderia graminis OAS925)
MTTFSVRKFLAAAVVAACLPFAPHTASAASAANLPDFTDLVDKVGPAVVNIRTTTRATSS
GPRGALPPGMDDGDMSEFFRRFFGIPMPQSPQSPGAPRGGDNGGSGGSGGSGGGQDTPDS
NDPEQNSGVGSGFILSADGYVMTNAHVIDDADTIYVTLTDKREFKAKLIGVDDRTDVAVV
KISAANLPTITIGDSNKVRVGEWVVAIGSPFGLENTVTAGIVSAKGRDTGDYLPFIQTDV
AVNPGNSGGPLINMQGEVIGINSQIYSRTGGFMGISFAIPIDEAMRVADQLKASGKVVRG
RIAVAIGEVTKDVADSLGLPKAQGALVSSVEPGGPADKAGVQPGDIILKFNGHSVDTATD
LPRMVGDTKPGTKATITVWRKGQTRDLPVTIAEMQPDKTAKADQKKPQPPKQRATNALGV
AVSDIPADQLRALKLRNGVQIDAVDGPAARVGLQKGDIILRVGDTDITSAKQFDELSSHL
DSQKMVALLVRRGENTQFVPIRPRGVQK