Protein Info for ABIE53_003029 in Paraburkholderia graminis OAS925

Annotation: uncharacterized protein YjbJ (UPF0337 family)

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 25 50 68 PF05532: CsbD" amino acids 4 to 55 (52 residues), 75 bits, see alignment E=1.8e-25

Best Hits

Swiss-Prot: 82% identical to Y3185_BORPA: UPF0337 protein BPP3185 (BPP3185) from Bordetella parapertussis (strain 12822 / ATCC BAA-587 / NCTC 13253)

KEGG orthology group: None (inferred from 91% identity to bpy:Bphyt_2892)

Predicted SEED Role

"Protein yjbJ"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (68 amino acids)

>ABIE53_003029 uncharacterized protein YjbJ (UPF0337 family) (Paraburkholderia graminis OAS925)
MNNDIAEGKWKQLVGKAKAAWGELTDDELTRAEGRADRLAGLIQERYGKSREDAEREVRR
FFDSNRDF