Protein Info for ABIE53_003002 in Paraburkholderia graminis OAS925

Annotation: glucan phosphoethanolaminetransferase (alkaline phosphatase superfamily)

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 170 signal peptide" amino acids 1 to 24 (24 residues), see Phobius details transmembrane" amino acids 47 to 67 (21 residues), see Phobius details amino acids 79 to 98 (20 residues), see Phobius details amino acids 124 to 145 (22 residues), see Phobius details PF13664: DUF4149" amino acids 8 to 104 (97 residues), 79.2 bits, see alignment E=1.3e-26

Best Hits

KEGG orthology group: None (inferred from 92% identity to bug:BC1001_2504)

Predicted SEED Role

"Probable transmembrane protein"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (170 amino acids)

>ABIE53_003002 glucan phosphoethanolaminetransferase (alkaline phosphatase superfamily) (Paraburkholderia graminis OAS925)
MPHRIFRLLTVVWVGSLLTIGYAVAPVLFTSLDRSTAGAVAAQLFRIEGVLGAVCGILLL
GLANVVIRRGGNAYRRLRWLVAGMLVCVLVGYFALQPFMNAMRVAALEAGTDIAHSAYAA
RFGMLHGVSSVFYLIESLLGIVLVWKLPVGTGAGAAQQGARDDVSGKVAG