Protein Info for ABIE53_002818 in Paraburkholderia graminis OAS925

Annotation: putative membrane protein (GlpM family)

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 268 signal peptide" amino acids 1 to 20 (20 residues), see Phobius details transmembrane" amino acids 29 to 48 (20 residues), see Phobius details amino acids 82 to 103 (22 residues), see Phobius details amino acids 108 to 127 (20 residues), see Phobius details amino acids 144 to 163 (20 residues), see Phobius details amino acids 168 to 186 (19 residues), see Phobius details amino acids 198 to 220 (23 residues), see Phobius details amino acids 226 to 243 (18 residues), see Phobius details

Best Hits

KEGG orthology group: None (inferred from 78% identity to bpy:Bphyt_2627)

Predicted SEED Role

"membrane protein, putative"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (268 amino acids)

>ABIE53_002818 putative membrane protein (GlpM family) (Paraburkholderia graminis OAS925)
MLALKLALVPAFLAALTMAARLWGPSVAGWLAGLPVVAGPIVLLLALARGPSFAAQASVA
SIAAIAASEAFNFAYAWSCRRFSWPLALVAGMSGWFVAAMLLTRLPASLAWAVAVACVAV
AVSQCGLPRATGQVPATRAGFGELVLRMVAGALLTLAVTSLAASMGATWSGLLSVFPLLG
MVLAVSAQREHGPDFVALLMRGMVVGRGSFAAFFAVTAVLLPRYGVWLSFACASAVCIVV
HGATRRMLDARRPAQEVSREASLRQPVD