Protein Info for ABIE53_002813 in Paraburkholderia graminis OAS925

Annotation: ATP-dependent helicase HrpA

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 100 200 300 400 500 600 700 800 900 1000 1100 1200 1300 1400 1455 PF00270: DEAD" amino acids 156 to 308 (153 residues), 25 bits, see alignment E=4.4e-09 TIGR01967: RNA helicase HrpA" amino acids 375 to 1125 (751 residues), 1034.2 bits, see alignment E=0 PF00271: Helicase_C" amino acids 391 to 513 (123 residues), 45.3 bits, see alignment E=2.8e-15 PF04408: HA2_N" amino acids 577 to 603 (27 residues), 31.9 bits, see alignment (E = 3.2e-11) PF21010: HA2_C" amino acids 604 to 657 (54 residues), 33.2 bits, see alignment (E = 1.9e-11) PF07717: OB_NTP_bind" amino acids 728 to 804 (77 residues), 52.5 bits, see alignment 1.4e-17 PF11898: DUF3418" amino acids 819 to 1451 (633 residues), 713.5 bits, see alignment E=7.1e-218

Best Hits

Predicted SEED Role

"macromolecule metabolism; macromolecule synthesis, modification; dna - replication, repair, restr./modif."

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (1455 amino acids)

>ABIE53_002813 ATP-dependent helicase HrpA (Paraburkholderia graminis OAS925)
MSNVPKSPAAANENAAPAADQTKAGDAKRRADQDANRGKPDVPRKAREPRSAVSGAEASA
KEKSRAEQAEHAESRGSRGSGEAGEPREAREPRAPRQPQESRGPRPPREPQQQRAPRQPQ
EARPPRPPREPRVVQPNPIPPITFPEALPVSARRDEIAKAIAENQVVIVSGETGSGKTTQ
LPKICLALGRGLGAGGAGLIGHTQPRRIAASATGRRIAEELGTPFGEVVGYKVRFTDNLS
PGASVKLMTDGILLAETQTDPLLKAYDTLIIDEAHERSLNIDFLLGYLKEILAKRADLKL
IVTSATIDADRFARHFGSEEKPAPVIEVSGRLYPVEVRYRPVAEESPAIKAAQGTSGSSG
TSGASRGDRPKSPRESGKERDRDLMEAIVDAVDELCREGPGDVLVFLPGEREIRDAAEAL
RKHHPPHTEILPLFARLSAAEQERVFRTSNARRIVLATNVAETSLTVPGIRYVVDTGLAR
VKRYSYRNKVEQLQVEAISQAAANQRAGRCGRVADGICIRLYDESDYQSRVRFTDPEILR
SSLASVILRMKSLHLTAIETFPFIEPPPGRAIADGYQLLNELGAVDDDNQLTPLGRELAR
LPLDPRVGRMILAARDQQSLKEVLIIASALSVQDPRDRPIEAQEQADQAHRRFADERSEF
LQWLKIWNWFDEAIAHKKSNKQLHEECRKNFLSQLRLREWRDVHSQLLTVVREHGWRLNE
AEATFEQIHLALLTGLLGNIGLKADDEPYYLGARGIKFYLWPGSALVKKAGKWVMAAELV
ETSRLYARCIARIEPEWIEKIGAHLLKKSLSEPHWEKRAAQVSAFERAVLYGLPIYHRRR
VSFGKQDPARARELFIRGALVEGEFDTKLGFFAHNRKLLADIEQLEHKSRRQDVLVDDEL
IFAFYDQALPKGIYTGAAFERWYRDEVKKSGQAEDKLRLLYLSRDDLMRHEAAGVTTDLF
PKRMTMSGVDMALSYHFEPGSPRDGVTLAVPLFALNQVDARRCEWLVPGMLKEKTHLLLK
SLPQKLRRHCVPLPEYAAGFVDRHAAPRFAAGGLLEALIADVREQKQVALKQADFKLETL
PPHLFMNFKVIDEHGRQLAMGRNLSQLRAELGGQAQQHFQKIASSAAGAALADAAGTRGQ
AAAPAPAGAASRSKGAAPPGPQTATQGAGGTALYENLTTWNFGKLPELLEIRRGGQTLFG
YPALVDRGTHCDVEVFDSPDEAARIHRAGLRRLFALQLKEPIKYLEKNLPGLREMAMQFM
TRGTQEELRDQLIDTALDRACLQDPLPDDDVSFHTRRDEGRSRLTLLAQEIARLVGQILG
EYASVLKKLVQAKSFTAAYADIQHQLDALIGKRFVVDTPYSQLTHFPRYLKGIALRIDKL
KADPARDARQFAEFQPLLQNYQRAVAQRGGVLDARLAEFRWLLEELRVSLFAQELRTPMP
VSVKRLYKVWDSMQR