Protein Info for ABIE53_002802 in Paraburkholderia graminis OAS925

Annotation: exodeoxyribonuclease-3

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

• TIGR00633: exodeoxyribonuclease III (xth)
  • amino acids 1 to 257 (257 residues), 255.4 bits, E=6.1e-80
• TIGR00195: exodeoxyribonuclease III
  • amino acids 1 to 257 (257 residues), 264.2 bits, E=1.3e-82
• PF03372: Exo_endo_phos
  • amino acids 4 to 250 (247 residues), 102.8 bits, E=1.2e-33

Best Hits

KEGG orthology group: K01142, exodeoxyribonuclease III [EC: 3.1.11.2] (inferred from 92% identity to bxe:Bxe_A1526)

Predicted SEED Role

"Exodeoxyribonuclease III (EC 3.1.11.2)" in subsystem DNA repair, bacterial (EC 3.1.11.2)

Isozymes

Compare fitness of predicted isozymes for: 3.1.11.2

Use Curated BLAST to search for 3.1.11.2

Protein Sequence (258 amino acids)

>ABIE53_002802 exodeoxyribonuclease-3 (Paraburkholderia graminis OAS925)
MKIATWNVNSLKVRQQHVIDWLETSGTDVLCLQELKLPDEKFPRAELEEKGYRSWFAGQK
TYNGVGILVRAGLNVDEASVVRNIPGFDDLQQRVVAATVEGVRIISAYFPNGQAPGTDKF
AYKLRWLAALHDWVKSEMALYPKLALLGDYNIAPDDRDVHDPKAWEGQNLVSPEERAEFV
RLIELGLVDAFRRFEQPEKIYSWWDYRMMAFRRNAGLRIDHILLSKALAETCASCEIDKV
PRKWDQPSDHAPVVAQLG