Protein Info for ABIE53_002766 in Paraburkholderia graminis OAS925

Annotation: competence protein ComEC

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 500 550 600 650 700 750 800 850 900 949 signal peptide" amino acids 1 to 20 (20 residues), see Phobius details transmembrane" amino acids 29 to 46 (18 residues), see Phobius details amino acids 70 to 90 (21 residues), see Phobius details amino acids 279 to 302 (24 residues), see Phobius details amino acids 314 to 336 (23 residues), see Phobius details amino acids 343 to 360 (18 residues), see Phobius details amino acids 370 to 403 (34 residues), see Phobius details amino acids 423 to 442 (20 residues), see Phobius details amino acids 464 to 486 (23 residues), see Phobius details amino acids 498 to 517 (20 residues), see Phobius details amino acids 524 to 544 (21 residues), see Phobius details amino acids 556 to 573 (18 residues), see Phobius details PF13567: DUF4131" amino acids 28 to 212 (185 residues), 84.3 bits, see alignment E=1.2e-27 PF03772: Competence" amino acids 255 to 576 (322 residues), 196.1 bits, see alignment E=1.1e-61 TIGR00360: ComEC/Rec2-related protein" amino acids 276 to 404 (129 residues), 66.4 bits, see alignment E=3.8e-22 PF00753: Lactamase_B" amino acids 609 to 740 (132 residues), 42.3 bits, see alignment E=1.3e-14

Best Hits

KEGG orthology group: K02238, competence protein ComEC (inferred from 77% identity to bug:BC1001_2277)

Predicted SEED Role

"Predicted hydrolase of the metallo-beta-lactamase superfamily, clustered with KDO2-Lipid A biosynthesis genes" in subsystem KDO2-Lipid A biosynthesis

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (949 amino acids)

>ABIE53_002766 competence protein ComEC (Paraburkholderia graminis OAS925)
MRAWWCGFALGVIWLQQQAELPGWRGGCLLVSLACAASAVAIWGLRRRAEIQSDGHSAVA
HWTLRRWRSFAGWCAVCCVAWGAGFGYAAWRADVRLAASLPPAWEGRDIDVTGSIKGLPA
RDDNGARFLFDVESVDSHEAGPLPPTPVIFPRVIQLAWIADEAPPPLQPGARWRLRVRLK
RPHGNANFGLRDAEAALLARNVRATGYVSAAAQAVRLRPDARGVGVTVDRWRAALRARID
AVLGSAPHRGIVVALAIGAQDEISDADWQLMRATGTSHLVAISGLHIGFAAGIAAWLAGA
FWRRSGWIGRNWPLWLPAQIVAVTGGALFAALHAALAGFNVPVQRALWMASVVALAYVSG
RNVPRSAVLAWALGLVVLIDPWAVVSAGFWLSFCAVAAILFATSGRPRVWDREQHFDEID
DDGVAAGGVLAASSRASGLWRSLRFPRFRTAAARRIRAFGERLHGAAHVQFAVTLALAPL
TVYWFAQIPLIGPLANAFAIPWVSVLVTPSVLAGVVLPAPLDAYAWRIAHALLDVMIAGL
QRLSGPRWVLWWLPQPNAWTLAAAAAGVLWCLAPRGWPLRWAAPLTWLPLVVPAPSGPPH
GSFRLTALDVGQGTSVLVETAHHALLFDAGPGPESTHAGERVVVPYLRAHGVNALDTLII
SHADSDHSGGAPAVLDAIEVRQMVAALAPANALWTNARQRGADTWPCAAGQRWQWDGVEF
AMLWPDPGPLQGKPNAHCCVLRVSTLPLAVASELGGAVRSAAESAGVDGTGDTDSSVRSA
PTSASNTAPTGASTNAPTGASTNASNSAPTAGPTPQPQATPLAALLTADIEAPSERVLLS
RDREMLRAEVLVVPHHGSKTSSTEPFLDSIDPLIALFQVGYRNRFHHPSAGVLARYSARH
IELGRSDSDGAVRVLVDPYFAAREAPHAPDAALTVERYRDTQRRYWMDR