Protein Info for ABIE53_002696 in Paraburkholderia graminis OAS925

Annotation: pimeloyl-ACP methyl ester carboxylesterase

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 321 signal peptide" amino acids 1 to 31 (31 residues), see Phobius details PF00561: Abhydrolase_1" amino acids 70 to 303 (234 residues), 69.1 bits, see alignment E=7.4e-23 PF12697: Abhydrolase_6" amino acids 82 to 311 (230 residues), 46.3 bits, see alignment E=1.3e-15 PF12146: Hydrolase_4" amino acids 94 to 300 (207 residues), 29.6 bits, see alignment E=6.7e-11

Best Hits

KEGG orthology group: None (inferred from 56% identity to bxe:Bxe_B0550)

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (321 amino acids)

>ABIE53_002696 pimeloyl-ACP methyl ester carboxylesterase (Paraburkholderia graminis OAS925)
MRKPIKIATVKAGVLVLATAAAFATTPSNAAGEGQNLRAVYTHQTAPTRFIDVNGTKLAY
RRFGKPGNVPLVFFQHFVGNMDNWDPAVIDGFAKNREVILFDNAGVASSEGEVPSTVEGM
ARHAIDLLHALNVKRADLLGFSLGSLVAQEVAVERPEVVRHLVLVGSGPRGGAGMATLTP
EFQEMIKKDSGNNDQLLLDVFFTQSDASRAAGREFLNRLHARSRDRDPDVNDKVAPAQVA
AFAAWGAPHADADAYLKNIKQPVLIVGGNHDIVHYPVNSFTLEEKLPNAQLILYPDSSHG
AQYQYPKRFVADVTAFLDRED