Protein Info for ABIE53_002686 in Paraburkholderia graminis OAS925

Annotation: NodT family efflux transporter outer membrane factor (OMF) lipoprotein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 500 557 transmembrane" amino acids 64 to 86 (23 residues), see Phobius details TIGR01845: efflux transporter, outer membrane factor (OMF) lipoprotein, NodT family" amino acids 75 to 536 (462 residues), 310.9 bits, see alignment E=7.8e-97 PF02321: OEP" amino acids 130 to 324 (195 residues), 86 bits, see alignment E=1.5e-28 amino acids 356 to 525 (170 residues), 89 bits, see alignment E=1.7e-29

Best Hits

KEGG orthology group: None (inferred from 70% identity to bgd:bgla_1g13800)

Predicted SEED Role

"Outer membrane component of tripartite multidrug resistance system" in subsystem Multidrug Resistance, Tripartite Systems Found in Gram Negative Bacteria

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (557 amino acids)

>ABIE53_002686 NodT family efflux transporter outer membrane factor (OMF) lipoprotein (Paraburkholderia graminis OAS925)
MIFTTAVARGLMCVSGSHSEAGNLRHEPHDGAPYLPEISGAKPACRRQAAEDGRHTVMRR
PSTSLLRVICVGVAIATGLGACAVGPDYAAPTTQLVPFHNRVETSTQQAARPSPHLDTWW
TGFDDPMLVTVVQRALAQNLDLAAAFARVQQARAVAAGAGAQLLPTLDFDATGTAEHQSL
LSPVGTIAKTFPGYSRDQREYNVGATASWEIDLAGGLRRSAAAARDEVQAAEAEQLGTRI
TVAADAADAYLQVRGFQTRLAVAQDQIDTDGRLLELVRVRRRAGAADEREIAQAEALLKQ
ARSTVPILRTSLEAQLNRLDVLMGAQPGTYAHELSVSSTIPAIPKIDDNDQPLDVLRRRP
DIIAAERRVAASSERIGAAISGYYPKISLSGALGFDSVSTNHLFTAAAFQPVGTGALRWR
LFDFGKVDAEVKQARGANAEALALYRQAVLKAAEDVENAFTALSQTEARRQELQDEVASL
TRARDLSERAYRAGAITLTDVLDADRQLLVARDDLDSSRADAARAAVGAFRALGGGWDIS
PDARVATNSSPPAVPVR