Protein Info for ABIE53_002565 in Paraburkholderia graminis OAS925

Annotation: PAS domain S-box-containing protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 100 200 300 400 500 600 700 800 900 1000 1100 1200 1300 1400 1500 1600 1700 1800 1900 1988 PF07714: PK_Tyr_Ser-Thr" amino acids 41 to 250 (210 residues), 57.7 bits, see alignment E=5.7e-19 PF00069: Pkinase" amino acids 86 to 252 (167 residues), 87 bits, see alignment E=7.2e-28 PF13191: AAA_16" amino acids 292 to 481 (190 residues), 152.3 bits, see alignment E=9.1e-48 PF13185: GAF_2" amino acids 1309 to 1454 (146 residues), 41.1 bits, see alignment 1.1e-13 PF01590: GAF" amino acids 1310 to 1453 (144 residues), 49 bits, see alignment 4.7e-16 TIGR00229: PAS domain S-box protein" amino acids 1465 to 1588 (124 residues), 26.5 bits, see alignment 2.9e-10 PF00989: PAS" amino acids 1470 to 1578 (109 residues), 33.1 bits, see alignment 2.6e-11 PF08447: PAS_3" amino acids 1490 to 1571 (82 residues), 48.5 bits, see alignment (E = 4.3e-16) PF00512: HisKA" amino acids 1762 to 1823 (62 residues), 33.5 bits, see alignment (E = 1.7e-11) PF02518: HATPase_c" amino acids 1874 to 1983 (110 residues), 81.6 bits, see alignment 2.9e-26

Best Hits

Predicted SEED Role

"Signal transduction histidine kinase CheA (EC 2.7.3.-)" in subsystem Bacterial Chemotaxis or Flagellar motility or Two-component regulatory systems in Campylobacter (EC 2.7.3.-)

Isozymes

Compare fitness of predicted isozymes for: 2.7.3.-

Use Curated BLAST to search for 2.7.3.-

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (1988 amino acids)

>ABIE53_002565 PAS domain S-box-containing protein (Paraburkholderia graminis OAS925)
MILTGYELEPLHDDGDFSLYRARKASHAVTMLALVAARPTSRSVARLVHEYRLAPFLDAS
WAAHPLALDPRREPPMLVLDDDGGEPLRRILRRPLELARVLRIAVNLAKVIGRVHQCGLI
HKDIKPAHVLVDSNDRVRLTGFGIASQLPQEHQPPIPPEVVAGTFAYMAPEQTGRMNRSI
DTRSDLYSLGVVLYEMLTGSLPFTASDPMEWIHCHIARRPPPPGERARGIPEPVERIVLK
LLAKAAEDRYQTAAGVEADLRACVASWGTNHSIAPFALGLHDASDRLLIPEKLYGREAQI
GHLVDAFERIVAGGATELVLIAGYAGIGKSSVVNELHKVLVPPRGLFAAGKFDQYKRDVP
YATFAQAFQWLLRDLLSKSDTEIEPWREQLMEALAPNGQVMVNLIPELALIIGEQPPVPN
LPPQDAQNLFHWVFRRFLGVFARAEHPLALFIDDLQWLDTATLELLEHLVTHPEVRHVLL
IGAYRDNEVDASHPLARTLDSIRSAAGNVQQIVLEPLNARSIAQLASDALHCDGAPVEAL
AQLVHEKTGGNPFFTIQFLTALHDEGLIRFDHRAAVWTWDLPGIRAKGYTDNVADLMAAK
LGRLSAETRDVLGQLACLGNVADVTALTWVQDKAEDKAEEVTNARMWEAIRSGLVFRVGS
NYVFAHDRVQEAAYELIPAGERPAAHLRIGRALASHTPPEALHEAIFDIVNHLNRGAALI
QSKTEREQAAALNLIAGKRAMSSTAYSSARSYLAQGVALLSDAAWDERYDSTLELYLAYL
ECEYLVGDFARADAVADLVLERAHDNLDRAKVFSLRMELYQLAGKYNESFAAALAALRDF
GIVFPEADDELRAAVDDALLEVPINQAGRPTEALVDAPVAEDPASRAVINLLVEAMPCAF
AARPVFYPLFTLKAVNLSLRHGNTDNSSFAYGNFALMLVSRIGDIPAAVQFSEMSLRLNE
KFGNRRLYGKLLHLYCSHVNFWRCNIDENLPVFEQAAVACMEVGDLVFAGNLAFNAVWQS
IEKGDALKDVHAHSARYATLMLESHNDAVHETIRIEQQFVASLRGLSSGMLTLNDDHFDE
AACCEAIVKSNFGCGIGVYHIIKLMLAYLDGRYADALNAAAMADAVLSSVMALAIEPTFH
FFHVLTLSALYADASAGQQQAYRQVITEKLPKFEMWARHCPANYGNRYSLVLAELARIDG
RDVDAMHHYEDALRLARVHGFIQNQAMANELAARFHASRARATLADHYLADARSCYERWG
AQGKVRQLESIYPQLRAELVDEEGSVATSVEQLDLATVVKVSESIFSGMDLNELIRKLML
LALEHAGANRGLLILARGDELRIEAEAETVGNTVAVRLPKSRPSAADLPMSILRYVARTR
DILMLDDVTAPNPYSQDEYIRAHDCRSILCLPLVKLTRLIGVLYLENTLTVDVFSPAQTA
VLRLLASQAALSLETLRLYADLQHAEALLTAAQELSHTGSFDWDVTGDAMFWSKESFRIF
GYDASITPTLQLMLDRVHPDDLAFVRSAFDRAARDGQAFDIEHRLSMPDGSHGHLQVVAH
VVADGPGQRRLVGALMDITTRKQAHAALARSEQRYRSLFRDIPVGLWQIEAQPLTAMLTE
LRGQGVDDLSAYISDHADWLERAKNTLVVEETNDHALQMFGATERRALLGPLPWVWKESP
DTLRRALESRYRGDMLFQETTRLPTLDGRVIDVLLTVARPRTVDDLGIALISLVDLTERV
RAQDMLQRLQADFAHAARISMLGELTASIAHELNQPLAAIAINCQVSERWLNRPVPELDE
VRDTNQRIAADAQRAVDIIGRIRGMALRRGPKYTLEPLALLIDEALVFLRREIQTRDVQV
SLELAPGVRRVRADRVQLQQVIVNLVVNAMQQMEQTGSPERRITIRTNAPDAGTLHCAIE
DSGPGIAPEHMDRVFQSFFTTKEGGMGMGLPICRSIIDAHDGRIEADNLSVHGGARFHFT
LPSAGAAP