Protein Info for ABIE53_002023 in Paraburkholderia graminis OAS925

Annotation: 4-amino-4-deoxy-L-arabinose transferase-like glycosyltransferase

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 500 573 transmembrane" amino acids 13 to 32 (20 residues), see Phobius details amino acids 91 to 110 (20 residues), see Phobius details amino acids 114 to 134 (21 residues), see Phobius details amino acids 141 to 160 (20 residues), see Phobius details amino acids 176 to 204 (29 residues), see Phobius details amino acids 216 to 234 (19 residues), see Phobius details amino acids 265 to 288 (24 residues), see Phobius details amino acids 300 to 319 (20 residues), see Phobius details amino acids 325 to 346 (22 residues), see Phobius details amino acids 356 to 377 (22 residues), see Phobius details amino acids 389 to 410 (22 residues), see Phobius details amino acids 418 to 438 (21 residues), see Phobius details PF02366: PMT" amino acids 15 to 245 (231 residues), 49.6 bits, see alignment E=5.9e-17 PF13231: PMT_2" amino acids 69 to 231 (163 residues), 55.2 bits, see alignment E=1.6e-18 PF18583: Arnt_C" amino acids 453 to 557 (105 residues), 138.4 bits, see alignment E=9.5e-45

Best Hits

KEGG orthology group: None (inferred from 93% identity to bug:BC1001_1834)

Predicted SEED Role

"Polymyxin resistance protein ArnT, undecaprenyl phosphate-alpha-L-Ara4N transferase; Melittin resistance protein PqaB"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (573 amino acids)

>ABIE53_002023 4-amino-4-deoxy-L-arabinose transferase-like glycosyltransferase (Paraburkholderia graminis OAS925)
MNDTPSRLPLNRTAILLLVLALAVIWFVPLGWRHLLPSDEGRYAEMAREMFVTGDWITPR
YNGYKYFEKPPLQTWANALTFAWFGIGEWQARLYTALTGFAGVLLIGYTGARVFNAATGV
FAALVLATSPYWNLMGHFNTLDMGLSFWMELTLCALLLAQRPNLKTSCERGWMWLCWGSM
ALAVLSKGLVGVILPGAVLVLYTLIARDWAVWKRLHLIGGLIVFFAIVTPWFVLVQQRNP
EFLNFFFIVQQFKRYLTPEQNRPGAFYYFVPVLIIGFLPWLSVTVQSVRHAWRLPRQPNG
FAPVTMMLVWIGFIFLFFSASHSKLLSYTLPIAPAIALLIGMYLPLVTREQLRRHLTGYV
LFLVVAAFASLFLPRFGSARNPAELYAEYRTWVLAALAVAFVLTLAALWLNRRGRASSLG
AIASFGAAWLLLGTIAGTGHDVFGRLSSGAPLAPAIKAQMAKLPADTPFYSVGVLDHTLP
FYIGHTMTMVEHPDELAFGVSVEPQKWLPSVQAWVERWKADRYALALIPPSTYDTLLKQG
LPMQVIARDSRRVVVMKPLAAGAAAAALEKPQQ