Protein Info for ABIE53_001956 in Paraburkholderia graminis OAS925

Annotation: leucyl/phenylalanyl-tRNA--protein transferase

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 245 PF03588: Leu_Phe_trans" amino acids 36 to 210 (175 residues), 246.4 bits, see alignment E=5.8e-78 TIGR00667: leucyl/phenylalanyl-tRNA--protein transferase" amino acids 40 to 221 (182 residues), 186.1 bits, see alignment E=2.4e-59

Best Hits

Swiss-Prot: 93% identical to LFTR_PARXL: Leucyl/phenylalanyl-tRNA--protein transferase (aat) from Paraburkholderia xenovorans (strain LB400)

KEGG orthology group: K00684, leucyl/phenylalanyl-tRNA--protein transferase [EC: 2.3.2.6] (inferred from 98% identity to bug:BC1001_1899)

Predicted SEED Role

"Leucyl/phenylalanyl-tRNA--protein transferase (EC 2.3.2.6)" in subsystem Protein degradation (EC 2.3.2.6)

MetaCyc Pathways

Isozymes

No predicted isozymes

Use Curated BLAST to search for 2.3.2.6

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (245 amino acids)

>ABIE53_001956 leucyl/phenylalanyl-tRNA--protein transferase (Paraburkholderia graminis OAS925)
MVPWLGPDDPFPPVERALGAASGAPGLLAASGDLLPSRLIDAYRHGIFPWYSDGQPVLWW
SPDPRMILRPAEFKISPSLRKTLKRVLRDDAWEIRVDHDFAAVMRACAQAPRRGQRGTWI
TADVVDAYTSLHRMGDAHSIETWFEGERVGGLYGVSFGKMFFGESMFADVTDASKMALAA
LVGHLRRHEIEMIDCQQNTSHLASLGGREIARKAFIAHVRASVDAPRIPWRFDKTALLDV
LARAA