Protein Info for ABIE53_001946 in Paraburkholderia graminis OAS925

Annotation: putative colanic acid biosynthesis UDP-glucose lipid carrier transferase

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 464 transmembrane" amino acids 12 to 32 (21 residues), see Phobius details amino acids 38 to 57 (20 residues), see Phobius details amino acids 69 to 88 (20 residues), see Phobius details amino acids 100 to 123 (24 residues), see Phobius details amino acids 279 to 301 (23 residues), see Phobius details amino acids 437 to 459 (23 residues), see Phobius details TIGR03023: undecaprenyl-phosphate glucose phosphotransferase" amino acids 8 to 464 (457 residues), 501.8 bits, see alignment E=2.5e-154 TIGR03025: exopolysaccharide biosynthesis polyprenyl glycosylphosphotransferase" amino acids 9 to 463 (455 residues), 450.9 bits, see alignment E=6.3e-139 PF13727: CoA_binding_3" amino acids 53 to 237 (185 residues), 177 bits, see alignment E=3.8e-56 PF02397: Bac_transf" amino acids 273 to 457 (185 residues), 228.1 bits, see alignment E=5.8e-72

Best Hits

KEGG orthology group: K03606, putative colanic acid biosysnthesis UDP-glucose lipid carrier transferase (inferred from 91% identity to bug:BC1001_1923)

Predicted SEED Role

"Undecaprenyl-phosphate galactosephosphotransferase (EC 2.7.8.6)" (EC 2.7.8.6)

MetaCyc Pathways

Isozymes

Compare fitness of predicted isozymes for: 2.7.8.6

Use Curated BLAST to search for 2.7.8.6

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (464 amino acids)

>ABIE53_001946 putative colanic acid biosynthesis UDP-glucose lipid carrier transferase (Paraburkholderia graminis OAS925)
MFRNTARCLDAFLVIAGGLLAHWMRFATLAALPDTERLLIAFNCVLVLLMFPGFGVYETW
RGKPLTAMLARVAAAWLAVVAAALLLAFTLHRMDAVSRLWFVYSTLISGALIVATKCAVH
VALRSVRRRGMNFRTVAIVGAPGFARTLLAHLEHAPQAGFKPVCVFDTSVDSSVERAAYG
ARLNRLPVLTDLTAFAAKVRDERVNEVWLALPLSEERTIYRFQRMFRHDFVNLRFIPDVR
SLSLFNHSLVDVVGLPTLSLGAPSLSPPQMWPKLIFDRLFAAGALVTLAPVFIVLATAIK
LTSPGPVFFRQTRKGADGEPFSIYKFRSMTVHHEAQGQVTQATRHDARVTKLGAFMRRTS
LDELPQFLNVLLGQMSVVGPRPHALEHDDLYKDQVYGYMHRYRIKPGITGWAQVNGYRGA
TAKVEKMEARVKFDLFYIHNWSFWFDMKIVFITIFKGFISRNAF