Protein Info for ABIE53_001925 in Paraburkholderia graminis OAS925

Annotation: polar amino acid transport system permease protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 500 567 signal peptide" amino acids 1 to 28 (28 residues), see Phobius details transmembrane" amino acids 51 to 79 (29 residues), see Phobius details amino acids 91 to 114 (24 residues), see Phobius details amino acids 155 to 173 (19 residues), see Phobius details amino acids 185 to 205 (21 residues), see Phobius details amino acids 221 to 246 (26 residues), see Phobius details TIGR01726: amino ABC transporter, permease protein, 3-TM region, His/Glu/Gln/Arg/opine family" amino acids 49 to 145 (97 residues), 88.2 bits, see alignment E=2.1e-29 PF00528: BPD_transp_1" amino acids 69 to 248 (180 residues), 61.3 bits, see alignment E=1.6e-20 PF00005: ABC_tran" amino acids 330 to 491 (162 residues), 111.4 bits, see alignment E=8.3e-36

Best Hits

KEGG orthology group: None (inferred from 94% identity to bxe:Bxe_B0599)

Predicted SEED Role

"Amino acid ABC transporter, ATP-binding protein yhdZ"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (567 amino acids)

>ABIE53_001925 polar amino acid transport system permease protein (Paraburkholderia graminis OAS925)
MKASRIKQNVVGTLVAAAMLVFQPAMAAGLNGVQVLDGFRELAGYVGSPFLLGGAWIAVK
ITLIAMSIGLMLGLGLALMRLSRFRTLNSAAWGYIWFVRGTPQLLQLVFIFDALPLIGLR
FDEVSTAVIGFALNEAAFSAELFRAGILSVNRSQSIAAAALGMGPLLTLRRIILPQSMRA
VIPGLANDTIGMLKLTSIASVIFVNELTFRSQQVVGQNFKFFTVFGAAAVIYLFLTSGIS
LVQVWLERIFDHERDRKLTFSWFGLRVSTPDAKPPGAPDLAPVAAQEMEPNGHAWIGTLL
PAESRTPRHRDEPFVACRNVWKSYGKREILRGVDLSIAHGEVVVILGPSGSGKSTLLKLI
NHLEPLDWGTIKVDSRYVGYREVPGGGGTVRPLHNLARARAEARVGMVFQHFNLFSHLSA
LDNIVEAQRQVYDVPRAEAQALGRDLLKSVGLAAHADFLPHRLSGGQQQRVAIARALAIK
PKLMLFDEPTSALDPELVGEVLGVMRGLADAGMTMIVVTHEVRFARDVADRVVFMDGGEV
IEQGTPQQVIDNPVHERTRKFLNVVAN