Protein Info for ABIE53_001913 in Paraburkholderia graminis OAS925

Annotation: D-galactonate transporter

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 455 transmembrane" amino acids 24 to 45 (22 residues), see Phobius details amino acids 58 to 82 (25 residues), see Phobius details amino acids 94 to 112 (19 residues), see Phobius details amino acids 118 to 137 (20 residues), see Phobius details amino acids 148 to 171 (24 residues), see Phobius details amino acids 183 to 205 (23 residues), see Phobius details amino acids 251 to 272 (22 residues), see Phobius details amino acids 287 to 305 (19 residues), see Phobius details amino acids 317 to 336 (20 residues), see Phobius details amino acids 342 to 364 (23 residues), see Phobius details amino acids 374 to 396 (23 residues), see Phobius details amino acids 407 to 428 (22 residues), see Phobius details PF07690: MFS_1" amino acids 28 to 393 (366 residues), 153.3 bits, see alignment E=8.2e-49 PF00083: Sugar_tr" amino acids 56 to 440 (385 residues), 35 bits, see alignment E=8.3e-13

Best Hits

Swiss-Prot: 44% identical to TUB3_AGRVI: Putative tartrate transporter (ttuB) from Agrobacterium vitis

KEGG orthology group: None (inferred from 50% identity to axy:AXYL_02615)

Predicted SEED Role

"Nitrate/nitrite transporter" in subsystem Nitrate and nitrite ammonification

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (455 amino acids)

>ABIE53_001913 D-galactonate transporter (Paraburkholderia graminis OAS925)
MNSPISAAASPLAEQAYRKITRRLIPFLFLCYVFAFLDRVNVGIAQLDMKHDVGFSDFTY
SIGAGIFFLGYVLMEVPSNLLLTRIGVKRTFSRIMVLWGILAAATAFVTLPSHFYTVRFL
LGLAEAGLYPGIIFYLTRWYPVERRAKAIAIFTCATGIAGLLGGPMSGWLMTHMEGIRAM
HGWQWMFIVQGLPASFLGIAAFFFLDDGPEKAKWLSDAEKAQILADLKHSSGVSGTHAEH
TFMNALRDPRVYVMGFVWFAQIAGVFAIGFWLPTLIKSTGLTSPLEIGIYSAIPYFVSWI
ALIGMNWNSDRTMERRWHCGITMIIGALGLFAAGLIHGSLAWSLVALSIATAGILAPNPL
IWAISTDYIRGSGAAGGVAVVNCIGLLGGFVSPMIIGSIKTATNSMAGGLGAISLLMLIG
ALAAIVLAPKTTGARSLEELAADRLDDSAAANVML