Protein Info for ABIE53_001891 in Paraburkholderia graminis OAS925

Annotation: glycine/D-amino acid oxidase-like deaminating enzyme

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 425 PF01494: FAD_binding_3" amino acids 26 to 58 (33 residues), 23.3 bits, see alignment (E = 1.5e-08) PF01266: DAO" amino acids 27 to 382 (356 residues), 248.2 bits, see alignment E=7.7e-77 PF00890: FAD_binding_2" amino acids 27 to 270 (244 residues), 26.1 bits, see alignment E=2e-09 PF03486: HI0933_like" amino acids 27 to 86 (60 residues), 25 bits, see alignment E=3.1e-09 PF13450: NAD_binding_8" amino acids 30 to 66 (37 residues), 26.5 bits, see alignment 2.6e-09

Best Hits

KEGG orthology group: None (inferred from 92% identity to bug:BC1001_5020)

Predicted SEED Role

"Opine oxidase subunit B"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (425 amino acids)

>ABIE53_001891 glycine/D-amino acid oxidase-like deaminating enzyme (Paraburkholderia graminis OAS925)
MKLDSYWLDTAPDFNEGADGPVEGRSDVVVIGGGFTGLSAALELALRGTSVTVLEAGRIA
GQASGRNGGQCNTGVAQDFASLAASVGLEQARAFYRAYESAVQTVESIVTQHRIDCDFVR
SGKLKLAAKPKHFDKLARTYDVLHREVDQDIELIEPARMRTEVGSDGFHGGLLQRNGAQM
HMGKFGVGLAQAAARHGARIFQNAAVTQIRRIAGGGYEITSARGVVRADNVLVATGPSRQ
GPLQWFQQRMAPVGSFIVVTEPLSKGQLDALFPQRRNYVTSLNIGNYFRVTPDNRLLWGG
RARFAMSDPRSDAKSGHVLQANLAKYFPELATTRVDYCWGGLVDITVDRLPRAGQHDGLY
YSMGYSGHGVQMSTHMGRVMADVMSGSADANPWRALPWPPVPAHAARRWMLPLVGVYYRL
QDVLH