Protein Info for ABIE53_001867 in Paraburkholderia graminis OAS925

Annotation: ribose/xylose/arabinose/galactoside ABC-type transport system permease subunit

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 326 transmembrane" amino acids 28 to 46 (19 residues), see Phobius details amino acids 53 to 73 (21 residues), see Phobius details amino acids 80 to 99 (20 residues), see Phobius details amino acids 105 to 127 (23 residues), see Phobius details amino acids 135 to 153 (19 residues), see Phobius details amino acids 172 to 194 (23 residues), see Phobius details amino acids 225 to 245 (21 residues), see Phobius details amino acids 251 to 272 (22 residues), see Phobius details amino acids 278 to 297 (20 residues), see Phobius details amino acids 303 to 321 (19 residues), see Phobius details PF02653: BPD_transp_2" amino acids 55 to 318 (264 residues), 129 bits, see alignment E=9.4e-42

Best Hits

KEGG orthology group: K10440, ribose transport system permease protein (inferred from 94% identity to bgf:BC1003_5381)

Predicted SEED Role

"putative sugar uptake ABC transporter permease protein"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (326 amino acids)

>ABIE53_001867 ribose/xylose/arabinose/galactoside ABC-type transport system permease subunit (Paraburkholderia graminis OAS925)
MIDDTQRAAQIVQAPARKKRGVAIQREIVVLVAMIVFNLLFTPHFVSLQTFNVNLTQVVT
IVIVGIGMTLVVATGGIDLSVGASMAIAGAVAPMLFMNIAGPPGIALAFTLPIVAAALCG
VFNGLLVTRLRVQPIVATLVLFIAGRGIAQVVTDGSLQAFSNPAFQWIALGKVAGVPFQI
LLMLALVAVFTWIVRKTLFGKYLLVTGGNEDAAYLSGIPTVRVKMIAYTVCAALAGLAGL
ISISVNSSSDANVIGLGVELDAIAAVAVGGTALTGGKAYITGTLIGALIIQLLRYTLLAH
GIPDAAALVLKAAIIIVAVYVQRKRG