Protein Info for ABIE53_001866 in Paraburkholderia graminis OAS925

Annotation: ribose/xylose/arabinose/galactoside ABC-type transport system permease subunit

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 318 signal peptide" amino acids 1 to 22 (22 residues), see Phobius details transmembrane" amino acids 35 to 53 (19 residues), see Phobius details amino acids 59 to 75 (17 residues), see Phobius details amino acids 81 to 101 (21 residues), see Phobius details amino acids 108 to 129 (22 residues), see Phobius details amino acids 149 to 170 (22 residues), see Phobius details amino acids 200 to 224 (25 residues), see Phobius details amino acids 230 to 248 (19 residues), see Phobius details amino acids 255 to 273 (19 residues), see Phobius details amino acids 285 to 305 (21 residues), see Phobius details PF02653: BPD_transp_2" amino acids 33 to 299 (267 residues), 134.8 bits, see alignment E=1.6e-43

Best Hits

KEGG orthology group: K10440, ribose transport system permease protein (inferred from 96% identity to bgf:BC1003_5380)

Predicted SEED Role

"Ribose ABC transport system, permease protein RbsC (TC 3.A.1.2.1)" in subsystem D-ribose utilization (TC 3.A.1.2.1)

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (318 amino acids)

>ABIE53_001866 ribose/xylose/arabinose/galactoside ABC-type transport system permease subunit (Paraburkholderia graminis OAS925)
MKKNLPIISALVALLVLGVTRYEHFADAYNVLSFWRYNSMFLLISIGMAFVIITGGIDLS
VGAVAALASVVSALASPHGGVAAVLAGSLAGLAVGVLNGLVITRMRILPFIVTLATSLGA
HGLALLLGHNDAVGIASDSSFAGFGQGDLFGLPIPGIVSAVAAILGWIALRSSRFGRHAL
AIGGSEEASRLMGLNVDRTLVAVYAVSGLLAGIAGSILAAQFGAGQPNEGVGWELFAISA
VVLGGTRLTGGEGSIAMTIAGVALLALVFNLLNFENGLGYISLSAYWQSVIRGMFLLLVI
VLQARVLNRNRGAVKLAH