Protein Info for ABIE53_001862 in Paraburkholderia graminis OAS925

Annotation: malonate transporter MadL subunit

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 131 signal peptide" amino acids 1 to 25 (25 residues), see Phobius details transmembrane" amino acids 34 to 50 (17 residues), see Phobius details amino acids 62 to 81 (20 residues), see Phobius details amino acids 93 to 112 (20 residues), see Phobius details PF03817: MadL" amino acids 1 to 117 (117 residues), 161.4 bits, see alignment E=4.4e-52 TIGR00807: malonate transporter, MadL subunit" amino acids 1 to 118 (118 residues), 168.7 bits, see alignment E=3.2e-54

Best Hits

KEGG orthology group: None (inferred from 95% identity to bug:BC1001_2104)

Predicted SEED Role

"Malonate transporter, MadL subunit" in subsystem Malonate decarboxylase

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (131 amino acids)

>ABIE53_001862 malonate transporter MadL subunit (Paraburkholderia graminis OAS925)
MIIYGTALLAFCHLAGLFLGDLLGVAIGVKTNVGGVGIAMLLLIFLRLYLHGKGLLPKET
EAGVGFWGAMYIPVVVAMAANQNVVAALKGGPVALLSALGAVAVCAVCIAVLSRTGRDST
SFISSPQPEEI