Protein Info for ABIE53_001790 in Paraburkholderia graminis OAS925

Annotation: putative MFS family arabinose efflux permease

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 420 transmembrane" amino acids 24 to 47 (24 residues), see Phobius details amino acids 61 to 80 (20 residues), see Phobius details amino acids 92 to 108 (17 residues), see Phobius details amino acids 114 to 139 (26 residues), see Phobius details amino acids 151 to 173 (23 residues), see Phobius details amino acids 181 to 201 (21 residues), see Phobius details amino acids 233 to 256 (24 residues), see Phobius details amino acids 266 to 287 (22 residues), see Phobius details amino acids 295 to 317 (23 residues), see Phobius details amino acids 322 to 342 (21 residues), see Phobius details amino acids 361 to 383 (23 residues), see Phobius details amino acids 389 to 410 (22 residues), see Phobius details PF07690: MFS_1" amino acids 29 to 374 (346 residues), 88.7 bits, see alignment E=1.9e-29

Best Hits

KEGG orthology group: None (inferred from 73% identity to bgl:bglu_4p0820)

Predicted SEED Role

"FIG00460211: hypothetical protein"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (420 amino acids)

>ABIE53_001790 putative MFS family arabinose efflux permease (Paraburkholderia graminis OAS925)
MSTTSNPDESARADTETTDSRDRLVTWALAVAQLVSWGSVYYSFSLLVVPMEQAMGWSRT
AMNAALSVGLLVSGVAAYPIGRWIDHGFGRRVMALGSIIAAAMLLLWADAQSLTVLFVVW
IGLGVSMAATFYDPVFAVVTHRYPRSFRTKITLITLVAGFASTVFIPLTQFLVGAVGWRT
SLVVLAALNVFICLPVHVAAIRSSRLDAEARPTSAEVKQTNDAATQRALRSPVFWALAVC
FTAYYATFAALTFHLVPLMVERGISNAVLVTTMALIGPAQVAARAIWFMFGRGVHISTVG
IVIVTLFPVSTLILIGAGHSAALLWLFALCYGAANGMMTILRGTIVQDLMWTEGYGAVSG
MLSFPSNVAKGVAPIAAASIWSFTHGYVAVEWTVFLVSILSAIAFFAAIRFSRHATVRAA