Protein Info for ABIE53_001771 in Paraburkholderia graminis OAS925

Annotation: arginine N-succinyltransferase

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 345 PF04958: AstA" amino acids 1 to 338 (338 residues), 432.1 bits, see alignment E=5.4e-134 TIGR03243: arginine and ornithine succinyltransferase subunits" amino acids 3 to 340 (338 residues), 456.6 bits, see alignment E=4.2e-141 TIGR03244: arginine N-succinyltransferase" amino acids 3 to 340 (338 residues), 482 bits, see alignment E=7.9e-149

Best Hits

Swiss-Prot: 47% identical to ASTA_SALAR: Arginine N-succinyltransferase (astA) from Salmonella arizonae (strain ATCC BAA-731 / CDC346-86 / RSK2980)

KEGG orthology group: K00673, arginine N-succinyltransferase [EC: 2.3.1.109] (inferred from 97% identity to bug:BC1001_1286)

Predicted SEED Role

"Arginine N-succinyltransferase, beta subunit (EC 2.3.1.109)" in subsystem Arginine and Ornithine Degradation (EC 2.3.1.109)

MetaCyc Pathways

KEGG Metabolic Maps

Isozymes

Compare fitness of predicted isozymes for: 2.3.1.109

Use Curated BLAST to search for 2.3.1.109

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (345 amino acids)

>ABIE53_001771 arginine N-succinyltransferase (Paraburkholderia graminis OAS925)
MIVVRVVQRGDVDALMRLAQETGPGLTTFKPDREALAARVERARRTMEDKAAPHEAGYFF
VMEDTQTGDVAGVCGIEAAVGLQQPFYNYRVSTVVHASQDLGIWTRMRALNISHDLTGYA
EVCSLFLSPRYRTSGVGGLLSRSRFMFLAQFRERFPQRLCAELRGHFDEQGTSPFWRAVG
SHFYQIDFNAADYLSSHGRKAFLAELMPRYPVYVELLPEEAQQCVGLTHSDTIPARRMLE
AEGLRYENHVDIFDAGPVLECHISDLRTVRESVMVPLEMADVPAGAPQDAPRSMVSNTSL
GDFRVGVAAGVPQDGVFRMNAIEASALGVKAGDPVRVLPLKHKQG