Protein Info for ABIE53_001755 in Paraburkholderia graminis OAS925

Annotation: luciferase family oxidoreductase group 1

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 331 signal peptide" amino acids 1 to 22 (22 residues), see Phobius details transmembrane" amino acids 48 to 64 (17 residues), see Phobius details amino acids 162 to 185 (24 residues), see Phobius details TIGR03558: luciferase family oxidoreductase, group 1" amino acids 4 to 322 (319 residues), 450.9 bits, see alignment E=1.3e-139 PF00296: Bac_luciferase" amino acids 17 to 299 (283 residues), 139.6 bits, see alignment E=7.8e-45

Best Hits

Swiss-Prot: 58% identical to YHBW_ECOL6: Luciferase-like monooxygenase (yhbW) from Escherichia coli O6:H1 (strain CFT073 / ATCC 700928 / UPEC)

KEGG orthology group: None (inferred from 95% identity to bgf:BC1003_2171)

Predicted SEED Role

"Coenzyme F420-dependent N5,N10-methylene tetrahydromethanopterin reductase and related flavin-dependent oxidoreductases"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (331 amino acids)

>ABIE53_001755 luciferase family oxidoreductase group 1 (Paraburkholderia graminis OAS925)
MIPFSVLDLSPVIAGATPADAFRNTLDLAQHAERWNYRRFWLAEHHNMTGIASAATSVVI
GYVAGGTKTIRVGSGGVMLPNHAPLVIAEQFGTLESLYPGRIDLGLGRAPGTDQSTARAL
RRDLQNSADSFPDDVAELQRYFADPVAGQRIRAVPGAGLHVPLWLLGSSLFSAQLAAALG
LPFAFASHFAPDYMLTALQVYRAQFRPSETLDKPYAMVGVNLFAADTNEEARRLFTSLQQ
QFINLRRGTPGQLQPPVDRVAASEMELNSVAHSLACTAIGDRDAVREGLKSIIEQTGADE
LMLTAQIYDHEARLRSFEIGAEIWEEMAGGK