Protein Info for ABIE53_001752 in Paraburkholderia graminis OAS925

Annotation: transcriptional regulator with XRE-family HTH domain

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 268 PF13560: HTH_31" amino acids 12 to 90 (79 residues), 51.1 bits, see alignment E=1.4e-17 PF17765: MLTR_LBD" amino acids 107 to 263 (157 residues), 147.2 bits, see alignment E=5.1e-47

Best Hits

KEGG orthology group: None (inferred from 58% identity to sml:Smlt2229)

Predicted SEED Role

"putative DNA-binding protein"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (268 amino acids)

>ABIE53_001752 transcriptional regulator with XRE-family HTH domain (Paraburkholderia graminis OAS925)
MSRRPSAEQRRELGAFLSSRRGRLQPAEFGLPDGPRRTPGLRREEVAVLAGVSVSWYTWL
EQGRDIQPSADALRRISRVLKLDTVESAHLFALSSRELSQVATGSGVTEGLERLVRSINV
PAYVRNTRLDILAWNDAIADLFVDYGSLEPHERNTLRLLFLYKPYRTLILDWEQMTRGMI
SAFRAARAQAPDKAPFDSLIDELTELSPEFSDWWQDTEVKGFDEGDKRLRHPAGGHIEFT
YVALTPTGRPDLSLVTYIPRHSASESDS