Protein Info for ABIE53_001694 in Paraburkholderia graminis OAS925

Annotation: iron complex outermembrane receptor protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 500 550 600 650 700 730 signal peptide" amino acids 1 to 39 (39 residues), see Phobius details PF07715: Plug" amino acids 89 to 187 (99 residues), 83.8 bits, see alignment E=1.2e-27 TIGR01783: TonB-dependent siderophore receptor" amino acids 92 to 729 (638 residues), 391.2 bits, see alignment E=5.1e-121 PF00593: TonB_dep_Rec" amino acids 263 to 699 (437 residues), 218.9 bits, see alignment E=2.4e-68

Best Hits

KEGG orthology group: K02014, iron complex outermembrane recepter protein (inferred from 93% identity to bgf:BC1003_2217)

Predicted SEED Role

"Ferrichrome-iron receptor" in subsystem Iron acquisition in Vibrio or Transport of Iron

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (730 amino acids)

>ABIE53_001694 iron complex outermembrane receptor protein (Paraburkholderia graminis OAS925)
MKVEKAGKCVALRERGLPHPRPIYVALMLGLASLGAHAQESPAAASGTDAAKELPAVQVR
SSAEDPLGPGVGYVAKRSMTGTKTDSSLLTNPQSVSVVTRQQMDDQGAQTVDQALRYTPG
VYSQDGTDIRFDQLYGRGFPLDSYLDGLHLYQSPRFATPRIDPYFMERLEVLHGPASVLY
GQGSPGGLVNYVSKLPMEQPYHEVMMQIGNHNNYQLGFDLSGPVDKNGTVLYRLTGVART
AETQVSDIKDQRLAIAPSVTIRPNRDTTFTLQGSFQRDPNGGLFNPVPAGATLFSNPNGQ
LGPDKYFGDPDRDGMHRTQYWFGYQFDHAINDKISVSQNLRYLHIDQHYYQTSVTSALGA
NQRTVSMWGNVDNEHYTQFQVDTHAQAKVATGAVQHTLLFGLDYQRSMLGDTEGNSVLGT
VDLYNPNFSSLPTQQANTRLDYSLSTVGVYAQDEARWRNWVLTFGVRQDWTGGNQQTTLL
TTGKGSIYHTNDHAFTWRAGLAYQFESGIAPYVSYSRSFQPVLGATYSGAPFSPTKGRQI
EAGVRYQPKWFDGFFSLAAFTLTQDNVSVVDPDHPGNAIQTGQTRSRGVEFEAHANVTAD
LKVIASYTYLNQQVTSTTTPTSFGKRPTIAPRNTASLWADYTFHRGPLRNFGVGSGVRYM
SSSAGDAANTFTVPGRVLVDLGAHYDIQNWRLSLNLNNVFDREYISYCTTASVCYWGATR
TVLGTARYQW