Protein Info for ABIE53_001680 in Paraburkholderia graminis OAS925

Annotation: integrase

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 406 PF13356: Arm-DNA-bind_3" amino acids 8 to 89 (82 residues), 76.4 bits, see alignment E=2.3e-25 PF22022: Phage_int_M" amino acids 100 to 195 (96 residues), 104.9 bits, see alignment E=3.2e-34 PF00589: Phage_integrase" amino acids 237 to 371 (135 residues), 55.5 bits, see alignment E=9.8e-19

Best Hits

KEGG orthology group: None (inferred from 57% identity to bps:BPSL2586)

Predicted SEED Role

"Integrase"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (406 amino acids)

>ABIE53_001680 integrase (Paraburkholderia graminis OAS925)
MARPIKKLSATKVRQEKTPGYYSDGGGLYLQVSPSGSKSWIFRYARNKKSHEIGLGAYLN
VSLESAREKAEGMRRALGNGDDPLAMRQSERAKIAAKMTFTECSDAYIEAHRHGWKNEKH
AEQWTNTLATYAAPFIGKKDIALVDTHDITRVLEPIWTTKNETASRVRGRLEKVLAWATT
RGLRSGENPARWKGHLDTLLAKPSAVQKGEHHAALPYGDIGTFMDDLRGMQGVAARALEF
CILNASRTAEIIGAQWSEIDLDAKLWTVPAERMKMKKEHRVPLSKRAVAILKEMQAARHG
DFVFPGMREGTGLSNMTLLAVLKRMERQNLTVHGFRSTFRDWAAECTNFPRELAEKALAH
AVRSEVEAAYQRGDLLAKRGKMMEAWAAYCAKKRQDGNVIPIQRQA