Protein Info for ABIE53_001465 in Paraburkholderia graminis OAS925

Annotation: uncharacterized protein YaiI (UPF0178 family)

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 156 PF02639: DUF188" amino acids 18 to 146 (129 residues), 164.1 bits, see alignment E=6.2e-53

Best Hits

Swiss-Prot: 85% identical to Y1579_BURA4: UPF0178 protein BamMC406_1579 (BamMC406_1579) from Burkholderia ambifaria (strain MC40-6)

KEGG orthology group: K09768, hypothetical protein (inferred from 85% identity to bac:BamMC406_1579)

Predicted SEED Role

"EMG2 protein"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (156 amino acids)

>ABIE53_001465 uncharacterized protein YaiI (UPF0178 family) (Paraburkholderia graminis OAS925)
MQVLVDADACPAVIKDMLFRAARRAEILVTLVANQYLRTPPSPFIRSIQVPAGFDVADAR
IVELAASGDLVITADIPLAAAVLDKGAHVLDPRGNRFTRENIQERLTMRDVMDQLRNTGI
DTGGPAPFTARDSKAFAGELDRFLARHGTPPRAPGG