Protein Info for ABIE53_001421 in Paraburkholderia graminis OAS925

Annotation: cytochrome c553

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 127 signal peptide" amino acids 1 to 33 (33 residues), see Phobius details PF13442: Cytochrome_CBB3" amino acids 35 to 116 (82 residues), 27.9 bits, see alignment E=2.4e-10 PF00034: Cytochrom_C" amino acids 37 to 120 (84 residues), 49.8 bits, see alignment E=7.5e-17

Best Hits

KEGG orthology group: None (inferred from 97% identity to bgf:BC1003_1016)

Predicted SEED Role

"Cytochrome c553" in subsystem Soluble cytochromes and functionally related electron carriers

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (127 amino acids)

>ABIE53_001421 cytochrome c553 (Paraburkholderia graminis OAS925)
MNKPQQALHTVFKAACASAAVFGLVAASVAHAADAGNGKVLSESHNCAACHGPNLNKPVS
PEYPKLAGQHADYVYWALRQYQMGNGNPHMGRNNAIMQAQVQSLSQSDMKDIAAYVESLK
GDLVQKK