Protein Info for ABIE53_001378 in Paraburkholderia graminis OAS925

Annotation: glutamate/aspartate transport system permease protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 245 transmembrane" amino acids 34 to 54 (21 residues), see Phobius details amino acids 66 to 88 (23 residues), see Phobius details amino acids 108 to 127 (20 residues), see Phobius details amino acids 159 to 179 (21 residues), see Phobius details amino acids 209 to 227 (19 residues), see Phobius details TIGR01726: amino ABC transporter, permease protein, 3-TM region, His/Glu/Gln/Arg/opine family" amino acids 25 to 132 (108 residues), 58.4 bits, see alignment E=4.2e-20 PF00528: BPD_transp_1" amino acids 48 to 237 (190 residues), 68.5 bits, see alignment E=3.2e-23

Best Hits

Swiss-Prot: 48% identical to GLTJ_ECOLI: Glutamate/aspartate import permease protein GltJ (gltJ) from Escherichia coli (strain K12)

KEGG orthology group: K10003, glutamate/aspartate transport system permease protein (inferred from 93% identity to bug:BC1001_0898)

MetaCyc: 48% identical to glutamate/aspartate ABC transporter membrane subunit GltJ (Escherichia coli K-12 substr. MG1655)
ABC-13-RXN [EC: 7.4.2.1]; 7.4.2.1 [EC: 7.4.2.1]

Predicted SEED Role

"Glutamate Aspartate transport system permease protein GltJ (TC 3.A.1.3.4)" (TC 3.A.1.3.4)

Isozymes

No predicted isozymes

Use Curated BLAST to search for 7.4.2.1

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (245 amino acids)

>ABIE53_001378 glutamate/aspartate transport system permease protein (Paraburkholderia graminis OAS925)
MDYRWHWGVLLQPVATGEPATYLDWLFSGLVNTVELTLLAFSLALAIGTVFGVMRTLPNR
AANAASAAYVSIFRGVPLIVQFFIWFFVVPEVLPTAAGDWFKSLPSHPQFLIASVVSLGV
YTGSRICEQVRAGIQARPVGQFHAAFALGLTRAQAYRHVLLPVAFRTILGPLTSEFLIIS
KNSAVASTIGLLELSGQARQLVDYTAQPYESFICVTLAYMALNFAILRGMRWIRRRTALH
GMIGT