Protein Info for ABIE53_001359 in Paraburkholderia graminis OAS925

Annotation: NitT/TauT family transport system ATP-binding protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 448 PF00005: ABC_tran" amino acids 46 to 185 (140 residues), 119.7 bits, see alignment E=2.3e-38 PF09821: AAA_assoc_C" amino acids 317 to 435 (119 residues), 140.8 bits, see alignment E=4.8e-45

Best Hits

KEGG orthology group: K02049, sulfonate/nitrate/taurine transport system ATP-binding protein (inferred from 98% identity to bge:BC1002_0811)

Predicted SEED Role

"ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component" in subsystem Alkanesulfonate assimilation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (448 amino acids)

>ABIE53_001359 NitT/TauT family transport system ATP-binding protein (Paraburkholderia graminis OAS925)
MQNPKAATTAAPIQTPPKPPRLGEEILRVKDVCRGFNKSQGELLVLDDANLSLREGEIVG
LLGRSGSGKSTLLRIIAGLIEPTDGEVTYMGKPLDGPAKGVAMVFQTFALFPWLTVLQNV
EAGLEAQGVAARERRERALAAIDLIGLDGFENAYPRELSGGMRQRVGFARALVVDPTLLL
MDEPFSALDVLTAETLRTDLLDLWTQGRMPIKAVLIVTHNIEEAVFMCDRILVLSSNPGR
VIAEIKVPFKHPRNRLDPAFRRLVDEIYAKMTARQTDEKTRKGLELHSWLPHVSTNLMAG
LIETLAAAPYHGRADMPEIARSLHLEVDDLFPVAEVLQHLGFADVREGDIFLTPPARVFA
EFGTQERKMMFAEHLLRHVPLAARIKKVLNERPGHRAPRVRFEQELEDFLSDSAAEETLD
AVINWGRYGEIFSYNDQTEIFSLEDVES