Protein Info for ABIE53_001336 in Paraburkholderia graminis OAS925

Annotation: LysR family glycine cleavage system transcriptional activator

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 324 PF00126: HTH_1" amino acids 8 to 67 (60 residues), 78.5 bits, see alignment E=2.8e-26 PF03466: LysR_substrate" amino acids 91 to 291 (201 residues), 119.4 bits, see alignment E=1.5e-38

Best Hits

KEGG orthology group: None (inferred from 74% identity to bgd:bgla_2g00600)

Predicted SEED Role

"Glycine cleavage system transcriptional activator GcvA" in subsystem Glycine cleavage system or Orphan regulatory proteins

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (324 amino acids)

>ABIE53_001336 LysR family glycine cleavage system transcriptional activator (Paraburkholderia graminis OAS925)
MAGKLPSLNGLKVFECAARHMSFTKAAAELNVTQTAVSHQIRRLEDELGIRLFHRFKERL
ELTASGQAYLQGVSLAFEQLRFSTEQLLEGSNKSTLTISTLATFASKWLLPRLGSFRLKH
PDIDIRLSASTDLIDFVAGGADAAIRYGSGEWKGLRVDRLMDDEIFPVCSPKLLTGSHPL
TSVDNLAHHTLLQVSGVTSNDWSIWLDAAKLPTNLRGGARLTFDLALMAVQAAVEGHGVC
IGRRAYVEDDLRAGRLIAPFGKSVITDRAFYLVSPHDLANCAKVVALRTWLMGVIGDSRN
EATVGLADFDDNVDAVGDDHIALS