Protein Info for ABIE53_001298 in Paraburkholderia graminis OAS925

Annotation: septum site-determining protein MinC

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 284 TIGR01222: septum site-determining protein MinC" amino acids 9 to 281 (273 residues), 177.3 bits, see alignment E=2e-56 PF05209: MinC_N" amino acids 9 to 80 (72 residues), 42 bits, see alignment E=8.4e-15 PF03775: MinC_C" amino acids 178 to 279 (102 residues), 116.7 bits, see alignment E=4.4e-38

Best Hits

Swiss-Prot: 84% identical to MINC_PARXL: Probable septum site-determining protein MinC (minC) from Paraburkholderia xenovorans (strain LB400)

KEGG orthology group: K03610, septum site-determining protein MinC (inferred from 87% identity to bgf:BC1003_0905)

Predicted SEED Role

"Septum site-determining protein MinC" in subsystem Bacterial Cell Division or Bacterial Cytoskeleton

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (284 amino acids)

>ABIE53_001298 septum site-determining protein MinC (Paraburkholderia graminis OAS925)
MSPKKSPFFELRSGSVDTLLFVVKTTDLDAMRAELTRRFEATPEFFANDVVAIDVRRLAE
NERVPLAEIAQLLDSVRMRPVGVVADTQQSWATESALPLLEARDRRGAAAKPADEESAST
STADSGEAANGAASTVNAASAASTAATNAASGATASASLEPAPAAEPVRLATSSQTMVVE
KPLRSGQRIYAKGDLVVLGLVSYGAEVIAEGNIHIYAPLRGRALAGVQGNHDARIFCTCL
EPELISIAGIYRTTENPLPADVLGKPVQIWLEEEKLMIEPLRLT