Protein Info for ABIE53_001264 in Paraburkholderia graminis OAS925

Annotation: translocation and assembly module TamB

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 100 200 300 400 500 600 700 800 900 1000 1100 1200 1300 1400 1468 transmembrane" amino acids 40 to 65 (26 residues), see Phobius details amino acids 1442 to 1460 (19 residues), see Phobius details PF04357: TamB" amino acids 1121 to 1463 (343 residues), 159.8 bits, see alignment E=6e-51

Best Hits

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (1468 amino acids)

>ABIE53_001264 translocation and assembly module TamB (Paraburkholderia graminis OAS925)
MTTDVSAQPPAPPPGNEPAGAAGQPGAPQPPRKRRGAGRLLLKTLGWTVAVLVLLLVLAL
GLVYGALTTERGTAYAWQAAVRLLGGKLSGTLEGGALANGVRLRAVRWRALDGSGTDIQI
DRVSGRWGLTREPWRFTIDYLHVGTIDARIGASSPSSNEPLKLPQDLRLPMQLEIRDVQV
DSLLLRQGTSTSEFSHFAFHGRSDGRHHEAAVERLDTPFGGVTASARLDGVKPFPLTGDV
GYSGKVNDEAVQVGGHLSGSLENVLAELDASGMKLAGHAQIEATPFAEVPLKRATLTFDH
VNPQAFAPGAPLADLAVRAELQPVGAEAGASGANGASSVNGATSGKGATSGKAGDSANSA
TSANSANSGAGRDGAVHAPGSPHRPSASKTPSPFAVAGHISIVNARPGAIDQNLLPLIDA
NADVRLDADAQRISNLAVRLVKNATLTGGGALTGKRGQFDLQVAGLDLNALQATVRPTQL
SGPIAIRLNDDIQSVTLDLADPKAALRAQGKLTMDPARLSFNDVRITSGKGRIELSGALK
HDANSSYNLKAQLTDFDPLTLTSQMPSRTPVAASSGPQRAAKGKRAAEASSEAAAQAGST
AGAKSAAPADKAAAAVKNTGKAVVKSEVMQRKTSAPKRAAPPARKIEAKVNGTLSATGVL
APGFTTKAEFKLGPSVYDGLPLTGGGTIQLAGSRILPSRANLSVAGNQVDLQGSFGARGD
RLRFHIDAPALERLGFGLAGMIAADGDLTGSFDHPNVVLNYKADSVVLSSNRIGHAEGHA
EVRDGANGALVFTTDARNVSAGGVDLATLTARLTGTRANHSLEAAATGKLQDRPLDLTLA
ANGKLTEARDGTRWDGTVTRLQNRGTPALNLESPLAVSAGPRHLTLGATRLTLEGAVLSL
KSFAFDHGRAQSAGTLTGISLARLQDLRREITGAPPAVRTDLIFDGDWDFALGSTASGHI
QLKRRSGDVTVEIGRGLASLGITDMAARAEFSGGNRLNATLHAQASRIGVIDADAHTTLV
ARDGFLTVDEESALSGNVSANVPSLKTTGGLFGPSYLLDGHLALKLALGGTVAKPNLTGS
LLGDELSATLVDQGVQLKDGIVRIALSHNLVDFQQVEFHGASGTLRATGRVRLDGAEPDL
TASIVADKLELFAAPDRNLSLTGSATVANAGAQGGMAINGKFVVDHALFDMPEQSAPKLG
DDVVVVRPDGTVAGERPRPVPGSNKPIGPFAPRANIDISLGNSFRFRGQGADLGLTGTIT
AMSAPNLPLRAVGNVRVTPGSTYTAFGRKLNIENGFFTFNGPVANPGLNILAMRRNQQVE
AGVQVTGTVQFPVAKLVSEPNVPDNEKLSWLLFGHGTDQGNNLGQQSTMTTALALLGSAS
GKRIAQTFGLDEFSIGHSEVGLTDPQVVMVSKAINEWLVIGYEQGLQSASNAIKATVNLT
RYWSVAAYGGTFDGLTLLYTRRYDRIKW