Protein Info for ABIE53_001219 in Paraburkholderia graminis OAS925

Annotation: ribose transport system permease protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 337 transmembrane" amino acids 21 to 41 (21 residues), see Phobius details amino acids 53 to 75 (23 residues), see Phobius details amino acids 83 to 104 (22 residues), see Phobius details amino acids 110 to 134 (25 residues), see Phobius details amino acids 142 to 161 (20 residues), see Phobius details amino acids 180 to 205 (26 residues), see Phobius details amino acids 236 to 254 (19 residues), see Phobius details amino acids 266 to 283 (18 residues), see Phobius details amino acids 290 to 307 (18 residues), see Phobius details amino acids 313 to 332 (20 residues), see Phobius details PF02653: BPD_transp_2" amino acids 50 to 329 (280 residues), 129.1 bits, see alignment E=8.7e-42

Best Hits

KEGG orthology group: K10440, ribose transport system permease protein (inferred from 96% identity to bxe:Bxe_A3674)

Predicted SEED Role

"Ribose ABC transport system, permease protein RbsC (TC 3.A.1.2.1)" in subsystem D-ribose utilization (TC 3.A.1.2.1)

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (337 amino acids)

>ABIE53_001219 ribose transport system permease protein (Paraburkholderia graminis OAS925)
MRPAPTEAVQSGRALRFAHRLYALGPFAGLIALCIAGTLLNRDFATLDNMMNVLTRTSFI
GIIAVGMTFVIISGGIDLSVGSMAALIAGSMIWLMNGLAAGVGGHTFPPLVIVTLGIAFA
LVLGGLFGCAHGLLITKGRIEPFIVTLGTLGIFRAVLTWLADGGALTLDNSLSDLYGPVY
YASLFGVPVPIWVFLVTAAGGALILNRTAFGRHVQAIGSNEQVARYAAIRVDTVKIVTYV
LLGICVGVATVLYVPRLGSATPTTGLLWELEAIASVVVGGTALKGGEGRVVGTVVGAILL
SVIANILNLTSIISVYLNAAVQGVVIIFVAFVQRGRR