Protein Info for ABIE53_001203 in Paraburkholderia graminis OAS925

Annotation: urea transport system permease protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 398 transmembrane" amino acids 46 to 67 (22 residues), see Phobius details amino acids 76 to 100 (25 residues), see Phobius details amino acids 106 to 127 (22 residues), see Phobius details amino acids 162 to 185 (24 residues), see Phobius details amino acids 192 to 210 (19 residues), see Phobius details amino acids 241 to 261 (21 residues), see Phobius details amino acids 287 to 309 (23 residues), see Phobius details amino acids 329 to 352 (24 residues), see Phobius details amino acids 364 to 388 (25 residues), see Phobius details TIGR03408: urea ABC transporter, permease protein UrtC" amino acids 73 to 387 (315 residues), 433.4 bits, see alignment E=3.6e-134 PF02653: BPD_transp_2" amino acids 81 to 376 (296 residues), 137.7 bits, see alignment E=2.1e-44

Best Hits

KEGG orthology group: K01998, branched-chain amino acid transport system permease protein (inferred from 95% identity to bug:BC1001_0706)

Predicted SEED Role

"Urea ABC transporter, permease protein UrtC" in subsystem Urea decomposition

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (398 amino acids)

>ABIE53_001203 urea transport system permease protein (Paraburkholderia graminis OAS925)
MTSATSSSNAPAHVGTHGTSGAETRAAQSGFALGLPPRPALLSRRAWLALIALIIVFGLG
VPFATLVVPETSPLHLSAYAMTITGKFMCYAIAALALDLVWGYCGILSLGHALFFALGGY
AIGMYLMRAIGHDGKYGSDLPDFMVFLDWHQLPWYWEGTQHLGYALLLVVLVPAVVAWVF
GFFTFRSRVKGVYLSIITQAITFAAMLLFYRNETGFGGNNGFTDFKRIGGFAITHPGTRT
ALLLITFAVLILAFIGARAIVTSKLGRVVTAVRDGETRLMFLGYSPLAYKLFVWTVSAVL
CGIAGALYVPQVGIINPGEMSPGNSIEMAIWVAVGGRGTLIGPIVGAFAVNGAKSFFTAN
FPEYWLFFLGLIFVLVPLFLPNGIMGLIELVTRKRNRS