Protein Info for ABIE53_001156 in Paraburkholderia graminis OAS925

Annotation: glycosyltransferase involved in cell wall biosynthesis/predicted nucleic acid-binding Zn-ribbon protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 100 200 300 400 500 600 700 800 900 1000 1100 1200 1300 1400 1500 1600 1742 PF03567: Sulfotransfer_2" amino acids 24 to 252 (229 residues), 76.5 bits, see alignment E=1.2e-24 PF14307: Glyco_tran_WbsX" amino acids 751 to 833 (83 residues), 48.4 bits, see alignment 3e-16 amino acids 839 to 1046 (208 residues), 93 bits, see alignment E=8.3e-30 PF13641: Glyco_tranf_2_3" amino acids 1062 to 1240 (179 residues), 52.6 bits, see alignment E=1.8e-17 PF00535: Glycos_transf_2" amino acids 1065 to 1176 (112 residues), 87.9 bits, see alignment 2.3e-28 PF00534: Glycos_transf_1" amino acids 1535 to 1684 (150 residues), 46.5 bits, see alignment E=9.1e-16 PF13692: Glyco_trans_1_4" amino acids 1545 to 1683 (139 residues), 52.1 bits, see alignment E=2.7e-17

Best Hits

Predicted SEED Role

"diguanylate cyclase/phosphodiesterase (GGDEF & EAL domains) with PAS/PAC sensor(s)" in subsystem Bacterial hemoglobins

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (1742 amino acids)

>ABIE53_001156 glycosyltransferase involved in cell wall biosynthesis/predicted nucleic acid-binding Zn-ribbon protein (Paraburkholderia graminis OAS925)
MSDVVDGKLAAQEKLFQFLRWNSYRSERHKLFYIATPKVACTSLKWWFAALEGYAESLYD
INDSSESDPELVVHESHKVAPHVTGLDEDALYKALTSNEYFRFAVVRNPYKRIFSAWQSK
LLLQEPLQVGRYTKFEFFHLPVNSRQDIAPAFEAFLEHLASNEAPSFWDHHWMPQASLLR
PDIIEYSRIAKVEDNAPLSAALKEWLGGYLPDPFAVHRANESLIPFQPDFITERSGELLR
AMYAEDFDAFGYDRALPGAKESFSEEQADVALKAVHLLRARHTQLGERSERLTALSQAVR
ERDTRIAVLGNAASERDATRAQRDALQMEVETLRAQRDALQIAREADIAARDEALAGRDQ
LVANLNRAIAGRDAEVSRLSRQAIQSNAQVKSLERTIEARQARIAESEAHMWHLERALAE
RDAQIAEGDRQIAMLQQEVAEKGAQLESERQRLAEIFGSRTWQLATRIRKGATAYRRALG
HSRPDEMRSVSPIARARRALQTRLAIRAIRGNNLFDGSFYLASNPDVRDAGLDPVRHYLT
HGWRERRDPSPAFSTAQYLSDNPDVERALVNPLLHYLRFGKREGRIVQASATAASFDVAH
SSQTDVAAVDASHHGPADGQVTAQSDEHAIVNNALDAEVDAIRQSGLFDESYYVSVNSEL
NLSPDEAIRHYCESGWREGRNPSDDFDTRYYLDTYRDIREAGINPFWHYAIAGASEARRA
APAASNLHEKDIWFGPIESDVKLIAFYRTPDWSVARAGRPMFKGHLQPFLPSTQPGFYDP
LDKDVMRWQAQAARRHGVYAFCFDLGTDADGSVPQQPVDGLLATEDADIRFCVQLHAKSE
EPSRAIAGKLALCFADRRYIHIDDRPVVLVSVAANAQQMGEFVASLRQHLAQQGVNAPKF
IGSWSADHDDVSRTELTQFFEASLDLSVAGEIGTFTPLSKGGINVVPYSVVAANGVSRLS
QDRAPDHFSYPVVTLARDNSAVRGADSIVYSRFHPKAYRRWLDAAISNARTSQPADRRMV
FINAWNDWNEGIALEPDHRTGFNRLNETARALTGYESGKKMPKVSVIVPNYRHEQFLRRR
LDSVYGQTYKNIEVLLLDDCSPDESRAVMDEYASAYPEISRTLYNDRNSGGVFRQWARGI
QAATGDLVWIAESDDFCDASFLETLVSTFNDEAVMLAYSFSLFVDRDENPIDGNFECYVS
DLDNPERWNSSYVETAHNEVRTALGIKNTIPNASSVVFRRPVDMPLLNDESWLSMRVAGD
WVFYLHLLRGGKIAFCADATNFFRRYPGSTADTTYKREVFYREVGMASRTVAELYDVPLE
VLERCRKGYEEFYLRVVGGDSEEFLRWYDYFSILQARQRRLPNVMVTTMGFSPGGAEILP
IRIVNELKRQGHSVLLLNTGLMVHDDRIREMVRNDVPVVEVSDVTATRELIRAFGIEALN
THQWHLQKYPSQVPDVYDSLRVHVASLHGMIEHGDAFGATEEQLRLADEKVTTWVYTADK
NLGPFIDCGLYDETSTRFAKIPNGMMPPTIVPVSRSSMGIPEDAFVLCCVSRAIPDKGWA
ETIEAVEGARALSNRDIRLILVGNGPVYDEYCQSGAFDFVHFAGFSENSVGHYAAADMGI
MLTKFKSESFPLTIVDCLFAGRPYIATDVGDIRNMLTEGDEVAGAVIELEDWAVPVDAVS
QIIAAFASDEQKYQRTRALVREVANRYKIDMVTAKYVELFKMSHGKRRIGSEERRCDLLQ
LN