Protein Info for ABIE53_001147 in Paraburkholderia graminis OAS925

Annotation: ubiquinone/menaquinone biosynthesis C-methylase UbiE/glycosyltransferase involved in cell wall biosynthesis/regulator of replication initiation timing

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 100 200 300 400 500 600 700 800 900 1000 1115 PF13489: Methyltransf_23" amino acids 43 to 165 (123 residues), 51.9 bits, see alignment E=2.6e-17 PF13847: Methyltransf_31" amino acids 48 to 151 (104 residues), 65.3 bits, see alignment E=1.9e-21 PF01209: Ubie_methyltran" amino acids 48 to 147 (100 residues), 29.5 bits, see alignment E=1.6e-10 PF13649: Methyltransf_25" amino acids 52 to 143 (92 residues), 71.8 bits, see alignment E=2.2e-23 PF08242: Methyltransf_12" amino acids 53 to 144 (92 residues), 43.6 bits, see alignment E=1.4e-14 PF08241: Methyltransf_11" amino acids 53 to 147 (95 residues), 84.4 bits, see alignment E=2.6e-27 PF13692: Glyco_trans_1_4" amino acids 926 to 1063 (138 residues), 69.5 bits, see alignment E=1.3e-22

Best Hits

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (1115 amino acids)

>ABIE53_001147 ubiquinone/menaquinone biosynthesis C-methylase UbiE/glycosyltransferase involved in cell wall biosynthesis/regulator of replication initiation timing (Paraburkholderia graminis OAS925)
MTTRVRTFRFKGAESGHEFTGERYLPGVAGPIQYEHYHRYLFSAPLCEGKEVLDIASGEG
YGSAVLAQSAKSVVGVDIDAQAVENARKRYGEQPNLRYEHGSATAIPLPDASVDILNSFE
TLEHFHEHEAFMQEARRVLRPNGLMIISTPNRPIYSPPGAPPNEYHVRELDREEFVQWLK
TGFKNFVLYEQKPTAGSMLFREGRKGAREVTYWSETDIGEYTATESMVDPVYFVAIASDG
PLPEPNDDVLEGSFSFARYDHSRNGHIGNQAVEIARLTTETIARGDEIGHLTGETVRLTE
AVLARDAEIGRLTQEAVRLNEEIIIRNNEIERLNQLLASANATANAAANVPQVEPSQIYE
QLAELTRQVKNSNAALRALQTQQAIPSGPSDEALRLENDRLRAQIDALVHSASWRLTEPL
RGVVTRLRPARRKLARALGRGNALPAHEGNSRVALPAGRLPAIPKSPARFTQAAQPRATI
FVLESGNDGSLAKCLAALSAHTSDVPYAVSVVGAANTELAGQYGVGFLGDSNTSRSLAAL
RDSIGQLSGEFVVLVSDRLVAHPGWLAALDEAFARFPDAAALGALILKDADTVETAGAAI
EADARLRPNCAGLTPDDPAVNAVMRVTCAGPGLIAMRADAWRAIGGHFGNDDPFQAGLVS
IGLLLSTLGKNTFLQPFARFTRLPVSKVDRAASSDANSKWEDAHQRWSVRQRFEKVFAAS
GADGTVLKLAARPKIVMIDAFVPKPDQDSGSADLFWYMRIFHAFGYQVSFIAAFEEQPLE
SYADALRRWGVRVQYATDLDHLNHLVLEESRDAQVVLVQRVVVARHVICALRERQVSAKI
VFGTVDLHYLREERIAIHERSPEALDYALTLRREELRAMSLSDATIVVSRLEHDIVKAAL
PEVNVHRIPIPRMPVRSASTFADRSGVVFVGGFAHRPNIDAVMFLVNEIWPIVRRNLPSA
ELRVVGSNVTPEISALDNPAAGVKIVGFVQDLDEVMSTARLSVAPLRFGAGIKGKVVSSL
LHGLPCVLSKMASEGMGLVDGEHVLEGETAEEIAAAIVRLHEDAQLWQRIADAGFLVAAE
EYSVESVADKFSALLDSVGLIDNSRVIEPSAFHIH