Protein Info for ABIE53_001144 in Paraburkholderia graminis OAS925

Annotation: lipopolysaccharide transport system ATP-binding protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 483 PF00005: ABC_tran" amino acids 61 to 194 (134 residues), 77.1 bits, see alignment E=2.2e-25 PF14524: Wzt_C" amino acids 335 to 466 (132 residues), 77.7 bits, see alignment E=9.1e-26

Best Hits

Predicted SEED Role

"Teichoic acid export ATP-binding protein TagH (EC 3.6.3.40)" in subsystem Rhamnose containing glycans or Teichoic and lipoteichoic acids biosynthesis (EC 3.6.3.40)

Isozymes

Compare fitness of predicted isozymes for: 3.6.3.40

Use Curated BLAST to search for 3.6.3.40

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (483 amino acids)

>ABIE53_001144 lipopolysaccharide transport system ATP-binding protein (Paraburkholderia graminis OAS925)
MSSDIAIRAASLTKGFESYEQPSDRLKRSVLGLLGTLAPLPPLRRALFKRAQDCVRTFWA
LKGVDFEIARGETVGIIGRNGSGKSTLLQIVCGTLAPSGGEVETRGRIAALLELGSGFDV
EYTGRENIYMNGQLHGLSRDQIDARLEQIIEFADIGHFIDQPVKTYSSGMFVRLAFAVIA
HVDADILVIDEALAVGDAFFTQKCMRFLRRFQQTGTVLFVSHDSSAVRSLCSRVIWLDRG
VIRETGEARHVCTSYFEAFYRQQQGEATSWASAEDLGERGSDIKAPAGLTRQPAQAQTAD
QRQRFIENAATPGVTLTALDVDPHSLPTQRDTPLIESVELISEQGSPVSWVVGGERVLLR
IRAKRPESGSLPVFAFFVKDRLGQPLFGDDTSLTSTGDNAALREAPAVEAEFVFDMPILP
PGDYAFTALVLTEAAHVAGTIAVQDCVHDALIVKSESTSVTTGLVGAPMSNIALFVRDEV
EQA