Protein Info for ABIE53_001128 in Paraburkholderia graminis OAS925

Annotation: putative transcriptional regulator

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 192 PF02622: DUF179" amino acids 19 to 179 (161 residues), 174 bits, see alignment E=1.2e-55

Best Hits

Swiss-Prot: 97% identical to Y868_PARPJ: UPF0301 protein Bphyt_0868 (Bphyt_0868) from Paraburkholderia phytofirmans (strain DSM 17436 / LMG 22146 / PsJN)

KEGG orthology group: K07735, putative transcriptional regulator (inferred from 99% identity to bug:BC1001_0645)

Predicted SEED Role

"UPF0301 protein YqgE"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (192 amino acids)

>ABIE53_001128 putative transcriptional regulator (Paraburkholderia graminis OAS925)
MSKSTDRINLTNQFLIAMPNMADPTFSGTVVYLCDHSERGALGLVINRPTDIDLEALFSR
IDLKLEIEPLLHVPVYFGGPVQTERGFVLHDPKDGNTYTSSMSVPGGLEMTTSKDVLEAV
ASGTGPERFLLTLGHAGWGAGQLEEEISKNGWLTVEADPKIVFDVPAEERFEAALALLGV
SLSMLSGEAGHA