Protein Info for ABIE53_001059 in Paraburkholderia graminis OAS925

Annotation: nickel/cobalt exporter

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 372 signal peptide" amino acids 1 to 33 (33 residues), see Phobius details transmembrane" amino acids 97 to 117 (21 residues), see Phobius details amino acids 138 to 164 (27 residues), see Phobius details amino acids 181 to 199 (19 residues), see Phobius details amino acids 265 to 289 (25 residues), see Phobius details amino acids 295 to 295 (1 residues), see Phobius details amino acids 297 to 322 (26 residues), see Phobius details amino acids 343 to 366 (24 residues), see Phobius details PF03824: NicO" amino acids 100 to 197 (98 residues), 58.7 bits, see alignment E=3.2e-20

Best Hits

KEGG orthology group: None (inferred from 70% identity to bpy:Bphyt_4270)

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (372 amino acids)

>ABIE53_001059 nickel/cobalt exporter (Paraburkholderia graminis OAS925)
MLIPSGRYSIRRSAFALVFLMITAAQTAGAQAVDVFGRTSSGASGAVQAPAPENGAEPRV
EMLEPVRRAIAAGVTLQGRLNAQLQDQLAAQRNGASVLAAWTLMLLSFAYGVLHALGPGH
GKMVVSTYLMSHRARVGHAIALSVWSACVQAISAICLVGSAAWLAHEGLGGVLTQAATLD
LVSYASLLCVGLVTVWSIVTRRDCCDEARITLIPKRRAGLFMIRRDNNDSQHGRYLGASS
LPSRRVPNWTRVDEKAGNLWIARQIVMTGLAVGLRPCVGAIFVLIAALANGMFMVGVLSA
FAMAAGVSLTVLTIGLASLGINRAVCSRSVARRQVLEMIRTRLALAGALIITLFAAWRVL
ALLSGWQLATLA