Protein Info for ABIE53_000947 in Paraburkholderia graminis OAS925

Annotation: glycosyltransferase involved in cell wall biosynthesis

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 405 PF13579: Glyco_trans_4_4" amino acids 15 to 178 (164 residues), 72.5 bits, see alignment E=1.3e-23 PF13439: Glyco_transf_4" amino acids 15 to 178 (164 residues), 57 bits, see alignment E=6.4e-19 PF20706: GT4-conflict" amino acids 195 to 323 (129 residues), 45.3 bits, see alignment E=1.5e-15 PF00534: Glycos_transf_1" amino acids 201 to 355 (155 residues), 94.4 bits, see alignment E=1.5e-30 PF13692: Glyco_trans_1_4" amino acids 204 to 343 (140 residues), 79 bits, see alignment E=1.1e-25

Best Hits

KEGG orthology group: None (inferred from 88% identity to bug:BC1001_0530)

Predicted SEED Role

"Glycosyltransferase"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (405 amino acids)

>ABIE53_000947 glycosyltransferase involved in cell wall biosynthesis (Paraburkholderia graminis OAS925)
MKILHVLASVDPRAGGPVEGVRRSGIAMQEAGHEIEVATCDAPDDPYLAAFPFPVHAFGP
TSNRYSYSAYLAPWLANHAKRFDAVIVHGLWQYHGFATWKALHDSDVPYYVYAHGMLDPW
FKEAYPLKHLKKWLYWPWAEYRVLRDARAVIFTTEEERTRARQSFWLYRARERIVPFGTT
VPEVDIASAREAFLQAVPGARGKRIVLFLGRVHAKKGCDLLIDAFARVAQRDDALHLVIA
GPDETGWAASLRAQAQAAGIAHRLSLPGMLQGDLKWGAFYASDVFALPSHQENFGVAVAE
ALGCGLPALISDKVNVWREIEEDGAGLIATDTVDGTEKSLIRWLELDDAARAAMRVQAAR
TFHARFRIDTMVSALTSLLETRGGRDSEANRNKLAGLREASQPSR