Protein Info for ABIE53_000938 in Paraburkholderia graminis OAS925

Annotation: uncharacterized protein involved in exopolysaccharide biosynthesis

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 444 transmembrane" amino acids 31 to 51 (21 residues), see Phobius details PF02706: Wzz" amino acids 16 to 112 (97 residues), 57.7 bits, see alignment E=1.2e-19 PF13807: GNVR" amino acids 394 to 436 (43 residues), 55.6 bits, see alignment 4.1e-19

Best Hits

Predicted SEED Role

"Tyrosine-protein kinase Wzc (EC 2.7.10.2)" in subsystem Colanic acid biosynthesis (EC 2.7.10.2)

KEGG Metabolic Maps

Isozymes

Compare fitness of predicted isozymes for: 2.7.10.2

Use Curated BLAST to search for 2.7.10.2

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (444 amino acids)

>ABIE53_000938 uncharacterized protein involved in exopolysaccharide biosynthesis (Paraburkholderia graminis OAS925)
MAINFENRYTDVSAADELHLSDYLRTIVRGWRTIATVTLIALALGCAYAFVAPPTYRADV
LFHVEDKTANANANGKDSLPPLTGMFDTKPSTAAEIELLKSRLVTEETVKKLHLDITATP
RYMPVIGGLIAGLVNGQWGFKLPQFINLSGYAWGNESISVSRFDTSKEMYDTTFTLVAGN
DRSYVLRDRNGIAILSGHVGETVQTDTADGPIALRVDALTGAAGSQFELSRASTLSTVDR
LQKALVVQETTLQSGVIRASLEGGDSALTAAIVNSMAREFVRQDVASRSTEAEHMLAFLD
QQLPGLRKELDEAEQRYNKFRNTHGTVDLGEESRLLLQQIVDNKTKLLDLQTQRAEMSQR
FTANHPAVASLDAQIAALQGAQVNMNRSVSVMPDTEQTALRLLRDVHVDTELYTNLLNSA
QQLRVAKAGQVGNVRVGRFRRSTR