Protein Info for ABIE53_000827 in Paraburkholderia graminis OAS925

Annotation: MHS family proline/betaine transporter-like MFS transporter

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 425 transmembrane" amino acids 21 to 49 (29 residues), see Phobius details amino acids 57 to 83 (27 residues), see Phobius details amino acids 90 to 109 (20 residues), see Phobius details amino acids 115 to 136 (22 residues), see Phobius details amino acids 156 to 178 (23 residues), see Phobius details amino acids 190 to 209 (20 residues), see Phobius details amino acids 240 to 261 (22 residues), see Phobius details amino acids 271 to 293 (23 residues), see Phobius details amino acids 305 to 325 (21 residues), see Phobius details amino acids 332 to 351 (20 residues), see Phobius details amino acids 370 to 393 (24 residues), see Phobius details amino acids 400 to 418 (19 residues), see Phobius details PF00083: Sugar_tr" amino acids 20 to 223 (204 residues), 65.5 bits, see alignment E=4.4e-22 amino acids 232 to 415 (184 residues), 28.6 bits, see alignment E=7e-11 PF07690: MFS_1" amino acids 34 to 283 (250 residues), 60.1 bits, see alignment E=1.9e-20 amino acids 266 to 416 (151 residues), 58 bits, see alignment E=7.8e-20

Best Hits

KEGG orthology group: K03762, MFS transporter, MHS family, proline/betaine transporter (inferred from 95% identity to bug:BC1001_0416)

Predicted SEED Role

"Citrate-proton symporter"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (425 amino acids)

>ABIE53_000827 MHS family proline/betaine transporter-like MFS transporter (Paraburkholderia graminis OAS925)
MNATTAASLAGSRRNSWRAVIAASIGNALEWFDLVVYGFFAVVIAKLFFPAGNDTVSLLL
TLGTFGVSFFMRPLGAIVIGAYADRAGRKAALTLSILLMMGGTLIIAILPTYRSIGIAAP
VILVIARLMQGFSAGGEFGSATAFLAEHVPARRGFFASWQVASQGLTTLLAAGFGVVLTG
NLTPEQMAAWGWRVPFFFGLLIGPVAWYIRTKLDETPEFLAADTTTTPLRDTFTSQKLRL
LIAIGAVVLGTVSTYLVLFMPTFGVKQLGLAPSVAFSAIALTGLIQMVFAPLVGHLSDRH
GRTTIMLISGVLLLVLIYPAFVYLVAHPTFGTLIALQILLGFLMTGYFAALPGLLSEMFP
VQTRTTGMSLAYNIAVTVFGGFGPFIIAWLISFTGSKAAPSYYLIFAALLSLASLVAARR
KLGFR