Protein Info for ABIE53_000781 in Paraburkholderia graminis OAS925

Annotation: tetratricopeptide (TPR) repeat protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 521 PF13432: TPR_16" amino acids 19 to 81 (63 residues), 15.7 bits, see alignment E=1e-05 amino acids 92 to 143 (52 residues), 18.6 bits, see alignment 1.3e-06 amino acids 119 to 182 (64 residues), 31.4 bits, see alignment E=1.2e-10 amino acids 167 to 210 (44 residues), 19.1 bits, see alignment 8.7e-07 PF07719: TPR_2" amino acids 150 to 182 (33 residues), 28.2 bits, see alignment (E = 7.8e-10) PF00515: TPR_1" amino acids 150 to 182 (33 residues), 31 bits, see alignment (E = 9.5e-11) PF13181: TPR_8" amino acids 151 to 182 (32 residues), 21.7 bits, see alignment (E = 9.6e-08) PF13176: TPR_7" amino acids 151 to 180 (30 residues), 15.2 bits, see alignment (E = 1.1e-05) PF13374: TPR_10" amino acids 153 to 178 (26 residues), 16.7 bits, see alignment (E = 3.6e-06) amino acids 184 to 207 (24 residues), 14.7 bits, see alignment (E = 1.5e-05) PF01075: Glyco_transf_9" amino acids 433 to 466 (34 residues), 29.8 bits, see alignment (E = 2.4e-10)

Best Hits

KEGG orthology group: None (inferred from 70% identity to bxe:Bxe_A4040)

Predicted SEED Role

"FOG: TPR repeat"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (521 amino acids)

>ABIE53_000781 tetratricopeptide (TPR) repeat protein (Paraburkholderia graminis OAS925)
MPAHSEAASDNSNISSLHDQALAAYRAGRHDTVHALAAQILTLDGEHTGAMHLEGLLALA
TGQPEVARHWLERAIQLGPEANLYNTLYAIQLRLGDHDGAVDSLRKGLALQPEFTALHYN
LALTLQHLDRPEDAAVSYRRTIKIEPGHSAAHNNLGRIFADLGALQEAEHHYRRALELAP
ANLVARNNLSMLLLATGRYQEAWPYFEDRWVSFRHADGSPARVPIQAPLPRWWGESPAVV
GAAEPKRMRSERLLVLDEQGYGDSLQFVRYLPMALELFAQVGYVCPAPLRRLYAESLCSR
WPGLVLLDEPASDFASWDRYCPLMSLPMAFGTQVATIPADTPYLHADMTRAAAWRARLDT
LPDAHLPRIGVVWAGGHSGIAVDRRRSLSAAQLAPLFALDQIRWISLQKTDDPAKLADPA
SQARLTDWTADLTDFADTAALIANLDLVISVDTSVAHLAAALGKPVWLLNRFAGCWRWLR
GRDDSPWYPGLRLFTQTQRDDWDDVLARTCEALKQRYAIGA