Protein Info for ABIE53_000768 in Paraburkholderia graminis OAS925

Annotation: FAD/FMN-containing dehydrogenase/Fe-S oxidoreductase

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 100 200 300 400 500 600 700 800 900 1000 1100 1200 1300 1364 PF12447: DUF3683" amino acids 23 to 147 (125 residues), 176 bits, see alignment E=7.7e-56 PF01565: FAD_binding_4" amino acids 197 to 342 (146 residues), 79 bits, see alignment E=9e-26 PF02913: FAD-oxidase_C" amino acids 461 to 579 (119 residues), 28.4 bits, see alignment E=3.9e-10 amino acids 730 to 818 (89 residues), 63.9 bits, see alignment 6e-21 PF13183: Fer4_8" amino acids 854 to 933 (80 residues), 33 bits, see alignment 2.2e-11 PF02754: CCG" amino acids 1064 to 1153 (90 residues), 30 bits, see alignment 1.4e-10 amino acids 1190 to 1255 (66 residues), 17.7 bits, see alignment 9.6e-07 PF11880: DUF3400" amino acids 1320 to 1364 (45 residues), 86.5 bits, see alignment (E = 2.1e-28)

Best Hits

Predicted SEED Role

"FAD/FMN-containing dehydrogenases"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (1364 amino acids)

>ABIE53_000768 FAD/FMN-containing dehydrogenase/Fe-S oxidoreductase (Paraburkholderia graminis OAS925)
MNAPQVFDPHGAATAVAADPEARLREIPYNYTSFSDREIVIRLLGDDAWAALAELRAERR
TGRSARMLYEVLGDIWVVRRNPYLQDDLLDNPKRRAMLIEALHHRLSEIEKRRRADLTEH
GDEAGVDRAARVETLVQAARRAVDEFESEFQKTYDLRRRATKVLGRVTEKDNIKFDGLSR
VSHVTDATDWRVEYPFVVLTPDTEAEIAGMIKACFELGLTVIPRGGGTGYTGGAVPLTPF
SAVINTEKLEQLGAVEMTELPGVDRKVPTIFSGAGVVTRRVTEAAEQAGFVFAVDPTSLD
ASCVGGNVAMNAGGKKAVLWGTALDNLAWWRMVDPEGNWLEVTRLDHNLGKIHDIEVARF
ELKWFDGNYAPGEKLLRTEALDIKGRVFRKEGLGKDVTDKFLAGLPGVQKEGCDGLITSA
RWVLHKMPAHTRTVCLEFFGQAREAIPSIVEIKDYLFETSKQGGAILAGLEHLDERYLRA
VGYATKSKRNGFPKMVLIGDIVGNDADAVAQATSEVVRMANGKSGEGFVAVSAEARKRFW
LDRSRTAAIAKHTNAFKINEDVVIPLDRMGEYTDGIERINIELSIKNKLQLVDALEAFFK
AGKLPLGKSDDANEIPSAELLEDRVQQALDLLKRVRTRWEFLRDKLDLSLREAQHYLVGL
GYEALAEKFADRVDAQADATVFHVTQDRTIRVSWKQEIRAELRQIFNGGEFKPILDEAQA
IHKQVLRGRVFVALHMHAGDGNVHTNLPVNSDNYEMLQDAHTAVARIMKLARSLDGVISG
EHGIGITKLEFLTDDEIGEFRAYKQRVDPHGRFNAGKLLEGADLRNAYTPSFGLMGYESL
IMQQSDIGAISESIKDCLRCGKCKPVCATHVPRANLLYSPRNKILATSLLVEAFLYEEQT
RRGVSIKHWDEFGDVADHCTVCHKCVTPCPVKIDFGDVTMNMRNLLRKMGKKKFNPGNAA
GMFFLNATNPQTINLARTAMMGIGYKAQRLGNEVLKKFAKKQTAHPPATVGKPPVTQQVI
HFMNKKMPGNLPKKTARALLDIEDNKIVPIIRNPKTTTADTEAVFYFPGCGSERLFSQVG
LATQAMLWEAGVQTVLPPGYLCCGYPQRGSGQFDKAEQIVTDNRVLFHRVANTLNYLDIK
TVVVSCGTCYDQLAGYEFDKIFPGCRIIDIHEFLLEKGMKLDGVTGTRYMYHDPCHTPIK
TMDPVKLVNALMGSEKDGYKIEKNDRCCGESGTLAVTRPDISTQVRFRKEEEIRKGAAKL
RGIPLVAEAGANAINPANASAGTAGAANGSVLKAGDGPQPKGATDVKILTSCPSCLQGLS
RYNEDAGIEADYIVVEMARHVLGEDWMVDYVQRANNGGIERVLV