Protein Info for ABIE53_000758 in Paraburkholderia graminis OAS925

Annotation: reactive intermediate/imine deaminase

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 128 PF01042: Ribonuc_L-PSP" amino acids 17 to 123 (107 residues), 89.7 bits, see alignment E=7.1e-30

Best Hits

Swiss-Prot: 40% identical to Y3206_SACS2: RutC family protein SSO3206 (SSO3206) from Saccharolobus solfataricus (strain ATCC 35092 / DSM 1617 / JCM 11322 / P2)

KEGG orthology group: None (inferred from 99% identity to bgf:BC1003_0362)

Predicted SEED Role

"Bona fide RidA/YjgF/TdcF/RutC subgroup"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (128 amino acids)

>ABIE53_000758 reactive intermediate/imine deaminase (Paraburkholderia graminis OAS925)
MKRYGVEGGKGTGGQHMPFSRAVEADGWLFVSGQTPMENGEVINGGIVEQSHKAIQNVFA
ILKEAGYGAEHVVRCGVWLDDPRDFASFNKVFREYFGDNPPARACVVSSMVIDCKVEVDC
VAYKKPAA