Protein Info for ABIE53_000568 in Paraburkholderia graminis OAS925

Annotation: drug/metabolite transporter (DMT)-like permease

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 299 transmembrane" amino acids 9 to 28 (20 residues), see Phobius details amino acids 34 to 59 (26 residues), see Phobius details amino acids 70 to 89 (20 residues), see Phobius details amino acids 96 to 117 (22 residues), see Phobius details amino acids 125 to 144 (20 residues), see Phobius details amino acids 153 to 172 (20 residues), see Phobius details amino acids 184 to 201 (18 residues), see Phobius details amino acids 213 to 233 (21 residues), see Phobius details amino acids 243 to 262 (20 residues), see Phobius details amino acids 268 to 288 (21 residues), see Phobius details PF00892: EamA" amino acids 15 to 140 (126 residues), 42.8 bits, see alignment E=2.9e-15 amino acids 156 to 285 (130 residues), 64.7 bits, see alignment E=5e-22

Best Hits

KEGG orthology group: None (inferred from 94% identity to bug:BC1001_0159)

Predicted SEED Role

"Permease of the drug/metabolite transporter (DMT) superfamily" in subsystem Queuosine-Archaeosine Biosynthesis

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (299 amino acids)

>ABIE53_000568 drug/metabolite transporter (DMT)-like permease (Paraburkholderia graminis OAS925)
MASNDIRRGAAEMSVAMLMSGTIGWLVVSSQQSAFNVVFFRCIFGGATLALVCAALGLFR
RKLFSWKMIGLALLGGAAIVANWVLLFAAYSRASISMATAVYNTQPFMLVALGAIVFRER
ISASTVLWLVLAFIGLVFVVKVEPAVLAVPGQYLVGIGYAVGAAAMYAVSSIITKHLKGT
PPHLIALIQVLLGVVMLAPLVRFDALPATGVQWLELVVLGVVNTGLMYVLLYGAIQKLPT
SMTGALSFIYPVVAIIVDRIAFGQTLAWIQVLGAVLILLAAAGVNLGWRIVPQRRAPSV