Protein Info for ABIE53_000465 in Paraburkholderia graminis OAS925

Annotation: cation diffusion facilitator family transporter

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 413 transmembrane" amino acids 21 to 41 (21 residues), see Phobius details amino acids 47 to 67 (21 residues), see Phobius details amino acids 87 to 107 (21 residues), see Phobius details amino acids 120 to 142 (23 residues), see Phobius details amino acids 164 to 183 (20 residues), see Phobius details amino acids 189 to 207 (19 residues), see Phobius details TIGR01297: cation diffusion facilitator family transporter" amino acids 17 to 296 (280 residues), 207 bits, see alignment E=1.8e-65 PF01545: Cation_efflux" amino acids 21 to 213 (193 residues), 161 bits, see alignment E=3.2e-51 PF16916: ZT_dimer" amino acids 219 to 295 (77 residues), 70.3 bits, see alignment E=1.2e-23

Best Hits

KEGG orthology group: None (inferred from 96% identity to bug:BC1001_0127)

Predicted SEED Role

"Cobalt-zinc-cadmium resistance protein CzcD" in subsystem Cobalt-zinc-cadmium resistance

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (413 amino acids)

>ABIE53_000465 cation diffusion facilitator family transporter (Paraburkholderia graminis OAS925)
MMPSAAIESAEKHRVARKSTFVSIALNTVLMALQIAVGVFAHSQALVADGIHSLADLISD
FVVLFANRHSGAKPDADHNYGHSRYETVASLFLGALLIAVGFGMLWRAGTRLADLESIPA
VHLSALIVAVLVLVSKEGLFRYMLREAQRVRSAMLIANAWHARSDAASSLVVALGILGSL
AGVRLLDPIAAAIVGFMVARMGWMFGWDALQDLSDRALDDAATADMRALLLSTPGVRDVH
ELRTRKMGDFALVDAHILVDPLISVSEGHYIAETARLRVLNDSRVLDALIHVDPENDAVA
HPPVGLPPRERIVADVNAALAAGGVKAAAVNIHYLSTGLDVEVVLPALPSHGSGKGDAEG
LERVDLAALKRRLGARNAGGVTRGEHAVDAKRFVHAGGRYGPWSSPYHSAAWH